MmuEX0041313 @ mm10
Exon Skipping
Gene
ENSMUSG00000020877 | Scrn2
Description
secernin 2 [Source:MGI Symbol;Acc:MGI:1343092]
Coordinates
chr11:97029938-97031061:+
Coord C1 exon
chr11:97029938-97030055
Coord A exon
chr11:97030416-97030589
Coord C2 exon
chr11:97030880-97031061
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACATCTCCACTTCTTCGCAGATG
3' ss Score
8.48
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGGGACAAAGGCCTTCCAGGTCACCTACCAGAGAACCTGGGTCCAGGGGAACAGATCTGACCTGAAGAGGAGGAAGTGGCGCCCGGAACCGAGCCTGGGGGTCTTGGATGCAGAGAGG
Seq A exon
ATGGCGTCGTCGAGCCCCGATGCCCCTTGTTCCTGCGACTGTTTTGTCTCTGTGCCCCCGGCCTCAGCCATCCCAGCTGTAATCTTTGCAAAGAACTCAGACCGGCCCCGAGATGAGGTGCAGGAGGTGGTGTTTATACCAGCAGGCACTCACGTCCCTGGGAGCCGGCTTCAG
Seq C2 exon
TGTACCTATATCGAGGTGGAACAGGTGGGGAAGACACACGCTGTGATTCTGAGCCGCCCCTCTTGGCTGTGGGGAGCTGAGATGGGGGCCAACGAGCTTGGTGTCTGCATTGGAAACGAAGCAGTGTGGACCAAAGAGCCTGTGGGGCAGGGGGAAGCCCTGCTGGGTATGGACCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020877_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0357710=Peptidase_C69=PU(21.0=60.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAAGGCCTTCCAGGTC
R:
GTCCACACTGCTTCGTTTCCA
Band lengths:
247-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types