RnoEX0078700 @ rn6
Exon Skipping
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84966989-84968284:+
Coord C1 exon
chr10:84966989-84967101
Coord A exon
chr10:84967481-84967654
Coord C2 exon
chr10:84968103-84968284
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCATCCCCACTTTTTCGCAGATG
3' ss Score
7.05
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACAAAGGCCTTCCAGGTCGCCTACCAGAGAACCCGGGTCCAGAGGAACAGATTTGACCTGAAGAGGGGGAAGTGGCGTTCGGAACCGAGTCTGAGGGTCTTGGAGGCAGAGA
Seq A exon
ATGGCATCATCGAGCCCCGACGCCCCTTGTTCCTGCGACTGCTTTGTCTCTGTGCCCCCGGCTTCAGCCATCCCAGCTGTAATCTTTGCAAAGAACTCAGACCGGCCCCGAGATGAAGTCCAGGAGGTGGTGTTTATACCAGCAGGCACTCACACCCCTGGGAGCCGACTTCAG
Seq C2 exon
TGCACCTACATCGAGGTGGAACAGGTGTGGAAGACGCATGCTGTCATTCTGAGCCGCCCTTCTTGGCTGTGGGGGGCTGAGATGGGTGCCAATGAGCTTGGTGTCTGCATAGGCAACGAAGCGGTGTGGACCAAAGAACCCGTAGGGGAGGGGGAAGCCCTGCTGGGTATGGATCTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214-'2-2,'2-0,8-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0357710=Peptidase_C69=PU(19.0=59.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCTACCAGAGAACCCG
R:
CCTACGGGTTCTTTGGTCCAC
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]