MmuEX0041418 @ mm10
Exon Skipping
Gene
ENSMUSG00000040364 | Sec1
Description
secretory blood group 1 [Source:MGI Symbol;Acc:MGI:1928893]
Coordinates
chr7:45684180-45685355:-
Coord C1 exon
chr7:45685266-45685355
Coord A exon
chr7:45684695-45684745
Coord C2 exon
chr7:45684180-45684291
Length
51 bp
Sequences
Splice sites
3' ss Seq
GTAAACACGTTTCTTGCTAGGTA
3' ss Score
6.1
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGTGTAGCCAGAGAAGAGTGCTGAGGGAAGGTGGTGCTGAAGGAGCTGGAAACCAACAAAGCCTTGGAGTTAGAGAGCAGACCCCTCAG
Seq A exon
GTAATTTCAAGGTCCCACCTTCCGGCTCTCAACACCGTGAAGTACCAGGCT
Seq C2 exon
GGACCCTTGCCAGCCATGCCACCCGAGACTGCGTGGGACAGGAGCACTGTCGCCCCCAGCAGGCTTGAAGCTTGGTGGCCCCAAACAAGCCGGCCTAGAAGGATCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040364-'7-3,'7-2,8-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGAAACCAACAAAGCCT
R:
CTTCTAGGCCGGCTTGTTTGG
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types