MmuALTA1041547-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000070564 | Ntn5
Description
netrin 5 [Source:MGI Symbol;Acc:MGI:2685330]
Coordinates
chr7:45684022-45686825:+
Coord C1 exon
chr7:45684022-45684498
Coord A exon
NA
Coord C2 exon
chr7:45686577-45686825
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
3' ss Seq
AACCTTTCACTCCCCCCCAGGCC
3' ss Score
9.37
Exon sequences
Seq C1 exon
ACGCACTTGGGGCAGGAGGATGCAGGATGGGGAGGGGCTGGCTGGCTTGGGGTCGGCCAAAAGCAGGGGCTGGCAAGCTAAACTCCAGAGGTGCTGGGGCAAGTGGGAACAGGCCAGGACCCCAATCCCAGAACCCCAAGCTGTAGTCATACCCCTACCTGCTTGGATCCTTCTAGGCCGGCTTGTTTGGGGCCACCAAGCTTCAAGCCTGCTGGGGGCGACAGTGCTCCTGTCCCACGCAGTCTCGGGTGGCATGGCTGGCAAGGGTCCCTGTGGGAAAGCGTGGCTGCTGTTGGCTAGGGTTTGGGTGGGCGGTAGTGTTGGATTCTGCGGGCTCTGCTTTCAGCTCCCGCCCAGAACCCCCACTAGCCTGGGCCTGAGAACAGCCACTCTCACTCCTCCCGAGAGCCCTCCAAGTGCTTCTCCTACAGAAGAGTGTGGGGATGACCGACTACAGGACACTCTTTTCTTCTCCAG
Seq A exon
NA
Seq C2 exon
GCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGTTCGGGGGAAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCACGGCCACGCTGCCCGCTGTGCCACTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGCGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070564-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=63.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTACCTGCTTGGATCCTT
R:
TAGCTGGCCACTATCCTGGTC
Band lengths:
354-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types