MmuINT1030808 @ mm10
Intron Retention
Gene
ENSMUSG00000040364 | Sec1
Description
secretory blood group 1 [Source:MGI Symbol;Acc:MGI:1928893]
Coordinates
chr7:45685266-45694402:-
Coord C1 exon
chr7:45693974-45694402
Coord A exon
chr7:45685356-45693973
Coord C2 exon
chr7:45685266-45685355
Length
8618 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CTTAACCCTTTCCCCTCCAGGTG
3' ss Score
12.38
Exon sequences
Seq C1 exon
TAGTAGCTCACTTTAGTTCCTGGGCCCAGGGCTCCGTGTGGGTGGCAGCAGGCCTCGGCAGGCACCTCCGCGCTCCTTCTGCTGCAGTCGCCGCAGCGGCCGGGCCCATCGTGGTCTCCAGGGCAGCGCGAGGCCGTGGCGGTTCAGGATGAGGCGCGCAGGGTCATAGTTGTCGTCGTCGTGGGTCTGCGCAGCACGGCCCAGCAGGAGGTAGTCAGCGCCAGGGCGCAGGCGCAGGCAGCCGCAGATTAGGTCAGCACGTGGCACCCAGGCCTCCTGGCCACCGCGGCGCACGGGCCACGCACGCTGTTTGAACACAGCCAGCACGTGCACGGCCAGCCGCCACCACTCGGGGCCCACCGCCTCAGACGGCTGCGACGACGACGCTGAAACCTGGGCGTGCAGAACTGAGGGAAGACACCACCTCAG
Seq A exon
GCAAGTGGGAGGCTAGCCCGGAGGAGGGCAGGCCTGATGAAGATGGCACCGTCACGTGGCGGTGGGAAGGGTCAGGCAAGGGCCTAGATTGGTGGTTCTCAGCTTGCGGGTCGTGACCCCCTTGAGGGACTACCCATCTTTTTCACAGTGGTCTCCTTGGACCATTGGGAAAAAGGTATTTACGTTGCAATTCGTTTGCAATTCATAACAGTAGCAACATTACAGATATAAAGTAGCAACGGGAATAATTTTATGGTTGAAAGGGTCACCACAACAGGAGGAACCACATTTGGAAGGTTGAGAACCACTGGTTTAAAGGGAGGCCAGGATCAAAGTTGGGAAGGAGTTATGTTGTGGTTTAGGATGGTGGACGCTGGTGGAATGTGAAGTGGGGGAGGGGAGAAATCCAAGATTGTGCTTGTAAGGGCCATGTGAGTTGCAGGACATGGGGGTGGAGGGTGGGAAATTGGGTGTGTGTGTGTGCGTGCCTAGAAATGGGATCAGGAAGAGTATGTGAAGCAGGGTTTTTAGGGTTGCAGTAAATTAAGAAGGATGAGGGAGGCAGAGGTCCAGAGGGATGCTCACCAGAGATCAGTCAGGGAGAGCATCCTAAGGACGTCAGATAATGCTGGCTGGGACTCTTGGAGTCATGTTCCTATTAACAGTAGCCTCAAGATTCCAGGGTCTCACTAAAATGTCGACGCTGGTCTAGAACTTACTCTGTAGCCTAAGCCAATCCAGAAGTCACTGGCGTCCCTCTGCCTCAGCCCCCTGAGAACTGAAGGTTTTGAGCTTGCACCAGCATGTTAAGCTAAGCCCAGAGCATTAGTGTTACACAGTGAGCCGGTTCCCAGGAGTGGGAGCCTCCAGAGAGGTGGGCCTTGTCAGAAAGGCTCTGGGGTAAACTGGCGGTCCAAAGAATGAATTGAGTGGGAAGGCCTGAGACTCGACTGATGTCACGCTACTGTGAATCAGTGCTGTGGTGTGGAGGGCCAGGAAGACCTCGGGGCTAGTTGCTGGCTAGCAAGGCAGATCTGTGAGTAGGAGAAGCCCCACCTCAAAGACGGGTGACACTGAAGTCAGTTGATGATCCTAGGGGCAAAGCAGCCTGTGCTCTGGGACAGAAAGCGGTGACCAGGAATGGTCCATCCTTTTCTGGCTAGGCCCAACCCCTGAGTATCTGAGAGCTGAGCTCATGGGCCTCAGTATTGGGCCCTGCTGTGCAGGGGTGGGGGTGGGGGGGGCAAAGGCTCAGATCTGAGACTGGAGGGATATGACAGGGCCTTCTCTACATCTCCATCCCTCCGTTCCTTCCAGCTCTCAGAGAGGTCAGGCTCAAGGACAGGATGCACAGCAAGTGTGAGAGTATGGAGGACCAGGAGACACAGGAAACAGGGATTCCTCCCACTGTCTCCCACCATTGTCTGCTGTTCTGTCTCAGATAACATTGTCTGGTGAAGACCAGTCCTTCAGGGTCTAACATCCTTTCCCATTTATAATAAGGAAGTGGAAGGATGGGGAAAAGGCAGGCCTGTTTTCCTCTCTCACTTACCATAATCCTGCTGACAGTATCTCTGAAGGCTCATGTGCACACTGCTGACGGAGACATTGCAATAGCCTTGACACTGTGGGTCTGGAGAGGGTCATGCTCTTTGCAGTGGGCTCCCGTGGCCTGGACCACAGCCTATCTCCCCTCCCCATTTCCACAAACAGCTGGACTGTCTGCGCCCTCAAGAAGGGCTGGAGCCCAGTCATGGTGGCACACACCTTTGATCCCAGCACTTGGGAGGCAAAGGCAGGGCACTCTCTGAGTTCAAGGCCAACCTGGTCTACAGACCAAGTTCCACCAGGGCTACCCGGAAAAATCCTGTCTCAAAAAAAACTCAAAACAAACAAACAAACAAACAAACAAACAAAATAACGAAACATAACAAAACAAATCAAAACCCAACAAAGATAGGCTGGGTACCCTCTGGACCTGGTCATCCCATCCCAGACCCCCTTTGCTGCTGGGAATGTCTGTGCCAGCCTCTTACCTGATCGAGATGCAACAGGGGTAGTAGCAGGGGTAGTTGTTGCCTCTGGAATTCCTGTCAGACCAGAGGAGAAATGCAGTGTAAACTCTAGAAATCAGCAGGAGGAATCCAGGCATGTGACTCTCTAGGGTACAACCATCCTGCCCCCTCACCAGGACCCACCCCTTCCCGTGTAAGAACAAGGGGTCCAAAACCTTGGCCTTCTTTCTAGGATTGAAGAGTCTGTAGTTTCCCACCTGAATTCTCAGACGATTCAGAGTTCATCCACTGCCACCCAGAAACCAAAGCCACACACTGCAGTTGTCCCCAGAGACCTTGATGCCATCTCCCCTGACCTGAGTTCAGGACTTACGGCTTCGTGTGCCATAGGACTCACGTTGGCAGGGCATCCTGGGTGAGCGGCTCTGCTGGTAGCCAGGACCACAGCGATTGCATGTCAGGCCTGTGACCCCTAACTTGCAGGAGCACTGGCCACTGGTCTGGTTGCACATCCCTCCCGTTGCTCCAATTGGGTGGCACTGGCAGGCTTCGTGACAAAACACAAGAGTTACTCGGGGCCAATAGGTTCCCCACAAAATCCATGTCCTGGTCCCCAAACCCGACAATCTAAACTCCGCCTCCTTTACAACCACCTCCGTACCTGCCATTACAGAATCCTAGCTCTGCTCTTTCCCCTTCAGCTTGGCTTCAGGCCACACTCACCCCTGCATGCCTTGTGACTAGTGATGGGCTGGCTCGGGTCCCTCCAGAACCCTGGCTGGCAGTAGTGACAGTGCCGCCCAGCTGTGTGGTGGCGGCACCGCTCACACACACCCCCACTACGGCCACCTGACAACCTGAATAGCTCGGAGTTGAATCGGCAGCGGCGGGCATGCTGATTGCAGGAACAGGCTAGGAACAAGATGAGGTCAGAAACTGTCACCCAGGCACATGAGGGCCAGATCCGTCCCCCATCCTCAGCTTTCTTCCTACCCTCCCGTTCTCAGGAAAGAACGCAGCTCTGTGGTTTTAGAGACTCATTCCCAGGATACCTTAATTCTCACGATAAATGGTGGTATCCCAAGGGTCACCAGTTAGCCTGTGACCCTCCTGGGAGGGTATAGTGCTGAACGAATGGGCTGGGTTGGGTCAATCCCACTCTATCCTATAGCTGTGTACCTCTATAGACTGTGGGGTGGCGTTTGCTGTGTTTATGTCCAGGGAGATTGAGATAAACGCTTAGGCCAGAGCATGTGCTAGGCCTATAGTGCTCCGATGCACTAGGCACCATGGCCCAAGTGTATGTCGTCCAGGACGTCCCCACCCCCATCCACAGTTGGGGGAATGAGACAGAGAGGTGAAGTCACCTGCCCAAGGCAGTGCTCCCCCGAGAGAGCCAGAAGCAACATCTGAGCTGTGTCAGCACTCCGTGAGCTTCCACAGGGCCCACAGGCTTGTTAAACATGTGCCTTTTTCTGAGAGCATCTTTCAGATTCCTGAAGGCAGTGACTGTCTAACCCCACTGCAGGGGTCTCTTTGACCACCACAGCCAGCTGGGTAACAATCCATGGGCGGTAAGAAGATAGTTCTGTTCAACATGACTCGGTAGCTGGCGCTGGTTCACACTGAGAGTCTGACCCCGAGTAGCTTATTTTAGGCATAGTTAATTAAGCACAGCACAATGTGGTGAAGTGTCCTGGTGACAGTGAACCCAGTCCTGTGTGCAAAGCAGCTTAAGACGTGAAAACCCCTTGTAAAGCACAAGTGAAAATCTTTTGCAAAGATTTAACTAAGAAAACAACCCCGAGGTGAGGGTGCTGGGGAGGATCCGGGGTGATGCAAAGGTCACCAGGATATCAACCATGTCCATTCCCAACCTTCTGGGTGGGAAGCGGGTGACACATCTCTTCCTGTGAAGAGACAACCCGTGTTGTAACTATTCCTGGCTCCCCCAGTGCTCGTCCGTGAGCACAAGGACTTCTGTGCCTCCCACACCCCCTGCTTATCAGAAACACTAGGAAACCCGGTGTATCTGTCTGTCTGGTGGAGGAGAACCAGCTCAGGGGAGAGCTCCTCCCGCGTGAAGCCCCGACCGACCTAGAACTTCTGACCTTGCTTCTGCCTCCTGAGGACTGATGGGCAGGAGAGCCTGGAGAGGTCTTGAAAACCGCATAACCTGCCGGGCGTGGTGGGCACACTTTTAATCCCAGCACGCAGGATTAAAAGGCAGGTGGATCTCCATGAGTTCAAGGCCAGCCAGGTCTACATAGTTCCAGGCCGTGAAGACTGCATGGTGAGACATTGTGAAAAAGAAAAGAAAACCCTAAAACAACAAAACCCCACCCACATAAATTGAGGGCTCATCCAGCATCCACAGGCCTGTACTTCTACCAGGAATTCCAGAGAGAAGTTAAAGCCGAAGACCTGGCCATGCTAAGAAAAGATGTGACTTAGAGGCTGAGAGCCTGGCCTGGAGCAGAGCAGGGGAGTCTTATGGTAAGGGTAGCTGTATGTCCTTGAGAAAATGAGTCCCTCCCCTGAGCCTCTGTTGTTCCCTGTCCAGGGAGGCTCTCTGCTGTCTCCCAGGGGGTTGGGTGATTCTGAGTGGCAAGGGTGACTCGAGTGCCTCTGTGCTAGCTCCTTTCTGACCCAGAGCATGGTAATGGCTTTGTCTCACTTCCCCCTCAGTCAAGCCACTCCGCTATAAAGCCACAGGAACGTGTCACTGCCTCTCATCCAGGTTCCCAGGGCGGACTGTCTTTCTCTTAACATGGGTCACACTCAGGGATACAGCCTCCCTAGCATCCAGCCCCTGTCCAAGCCCTGCATGAAGCCTACCCCAGCGTCAGGGTACGTGGGTCTCCTCTGCTGGTCCCTGGGGTGGTGGAGGGCAGAAGGCTGGGACACTGGTTTCCCTGAAATCTGAGAAGTGTGTGTGTCTGTCTGCACCTGTCTGTCTGTCAGTGGATTAATTGCCCATGAGCCTGAAGGTATTTAGCTCTCCTTCCAAGGTCACAGACAGAGCTCCTAAACTTGGGATGGGGATGTGTCGAAGCTGAGAATTTTGAATCTTCAGATTCTCACGGGCTTGCCTCACCTGAGGAAGTAGTACCCTCAGCCCCACCCCTTGAAGTAATAATGTCTTCCCCACATGAGGGAATTAATCCCCAGAGTCGGATAAACCAACAGTGACTTTCGCAGAAGAAAATGCCAGACAAGACAATACTGATGTTTCTCAAGGCCCACCAATAGTTTCTTCTAGACCTATAGCCAGACTCAAGGCAAAACAGGCCCCTAGAGGGGAGGTAGAAAGTGTAGTCCATGATGCTACTAAGGAGCTTAATGAGTTTGCTAATTCATTCAAGCAGAAGTCTGGGGAATATGTGTGGGAAGGGATTTTAAGGGTGTGGGATAATGGTGGAAGGAGCATAAAACTAGAGCAGGCTGAGTTTATTGACATGGGTCCTCTGAGTAGAGATTCTAGGTTTAATATGGAAGCTTGCACAGTTAAAAAAGGTGTCAGAAGTTTGTTTCATATCTGTTTGATCTGTATAAGCAGAAAAATTCTCAAATGAAAGAAAGGCTACATTGGATCGTGGCAAAAGGCAATCTCGGCCAGTGAATCAATTTCCAGACTTGAGCCAGTTTGCAGATCCAGAACCCCCGGATTAAAGGGGTGGCCAGGGTCCCCTGAGGAAGGATCTCAATGAGACACCTAAAAGTTTTGCTGTTCGCCTTTCTCCAGTTCTTCCCCAGAGGGACCTGCGGCCTTTTACAAGGGTAACTGCACTGGGGGAAAGGAAACAATCAGACTTTCCGGGGTCTGCTGGATACTGGCTCTGAGTTGACACTGGTCCCAGGAGATCCCAAGAAACATTGTGGGCCTCCAGGTAAAGTTGTAGGGGCTTATGGAGGACAGGTGATTAATGGAGTTTTGACTGATGCCTGACTCACAGTAGGCCCAGTAGGTCCCCAGACACATCCTGTGGTCATTTCCCCAGTCCCAGAATGGATAATTGGGATAGATATACTTAGAAATTGGCAGAATTCTCTCACCCTTACTTTCTTATTCATCCCCAAGATCTAAATAACTTTAAAAGTCCACAATCTTTGCAAATTCTTACATATTAAAATTTCAATCCTTTTAAAACATCCAATCTCTTTTAAAATTCAAAGTCCCTTTACAATTAAGTCTGTTAGCTGTGGGCTCTACTAAAATACTTTCTTTCTTCAAGAGGGAAAAATATCAGGGCACGGTCACAATCAACAGAGCTGACAGTGTGGCCGGAGGAAGAGAGGCCAGAGCGTGTTCTGGGGGTGGCAGCACCTAGGAAGACAAGTCCCTAAGAATCATCTTAGCTCTGCATCCTGCCAGGCTCCTTTTTACCTGGGAAGGTCACTCATGGAGGTGCTCAGAGGAGGCTCCCTGGATCTCTGCAGCCTTAAGGACAGTGTTCTTAAGCCACTTTATAGGATGAGAAAACAGGTACAGAGAGGTCAGGTCCCTTGCCTGAGACCACGTAACTGAGCAGAGGAGCCGAAACTGGGCCAGGCTGTCTGCTACAGCTGCTCCTAGTTGTGTTTAGGCTCACCTAGTATGGCAGCACCCACTGGGAGCTGGGCAGATGGTCATAGCAGGTCATACAGCGTGGCTTTGTGTTAGTGAATAATGGCTACAGTCTCCTCAACAGGACAGTAGGCTGGCAGCTGGTGGGCCATCAGAATGTTTCATGATTAAATATCCCCTGTGCCGGCTCTCCCAGGAGTCAGGAACTATGTCTGCCTGTACCCTTGCCCAAACCCAGTGCCACACCAGACCCTGGGATATGATCTTCCCAGGACTGCTTTAGTGCGCCTACTGGTTACATCTGGTGGGTGGAGTCCCTGACAGAGGGTTTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTCTGTGTGTCTGTGTGTCTGACATGCTTGGCAAACAAGGAAAGAGAACCGGACCACAGCACACTGTGAGAGCAAGGGAGGAAAAGCATTTCTGAAGGGAAGAGAACAGTTTGCATGCTTTGGAACAAGGGGTCAATGTATGTTGGCATGCTGTCCCAGGGGGCCAAGTAGTGTCAAGGATTGGGGGCAAGACCCATGACTTACGCAAGCACGGGTGAGGGTGCTGGGGTGTGGCAGGTCGCCAGGGCCAGTCTCGATGGGATGGGCGACAGCTCTCACACCCTGGGCCAGTGGTGTGGTGGCGGCAGCGGCAGCGTGGGGGCTGGGCCCGAGTGGCACAGCGGGCAGCGTGGCCGTGGCACTGGCAGCGGCCTCTTACTCCAGTGGTCACCAGCCCTGCTTTTCCCCCGAACTCCACACGGAGGTAGCTGGCCACTATCCTGGTCTTGGGGCCTGGGGGGGAGTGAAAGGTTACCTTCTTGGGGCCCCCCAGAGCCCCAGGCCAGGCAGGCCTACGCCATAGTGGCCTCCAGGGCCCCCCAGTGGCCCAGGCAGCAGAAAGAACCAGGGCTGGAGGTCCCGCTGTGCAGAAACGCAGGGTCACAGATGTCAAGAGGAAGGAGCCGTCCAGGTCCAGGGTCAGACTACTGTTGCAGGCAGGGCCAGGGCTGGCTGCAGGAAGAGCACAGGTCTGAGAGCAGGGGGCTGCTGCCTTGCCAACCAACTGGGTCACTGGTGGGAGGCAAAAGCGAGGGCGCCCTCCTGGATCATAGCATGGGTCTGAGGTGGCCTGGCTAAGGAGGAGCAAGAGGCTGAGGGTAATGGGCGTGGTCACAGTAGAGCCGGCACCTGTAGACAGAGGTGGCAGATGGGGTCAGTTGGTGTCCACCCTGCTGAGGATTCCTGCAGACCCTGCATTCCTCCTGGTCCTGCCTGAGCCCCCTCCCCAGCTGCCTCGAAGCGAGGAAAATAGTTCCATCTGGGGAGAATTACTGTTTACATAACCCACAGGGAAAGAACGCAAGCAAAATTGAGAATTTTGCCTGAACTAATCCAGAGCTTAACACCCCAAAGTTATCCATCAGTGTCGAGGGGTAGAGGCCCTGGGGAGAGGGTGAGGGGAGATGAGGAGCCAGCAGGACCGACAGATGTGAAAACCTAGGAGAGCGAGTCACGGAAGAGATGGAGGAGCCTGGCCGAGAGAGGAAGCCCACAGAGAAGAGATGGAAGAGCCTGGCCGAGAGAGGAAGCCCACAGAGAAGAGATGGAGGAGCCTGGCCGAGAGAGGAAGCCCACAGAGAAGAGGAGCAGAGTCCAGCACAGACCCGGGGAAAGCCGGAGGCTAGACAGGGCAGGGCAGAGGACCGGGTGTCCGGCTGGGTAGTTGGATGGCATGAAGCTAGAGGCTCTGGGGCTGGGAGGGAAGAGCAGGTAGGCTCAGAGACAGGCATGAAAGCCCAGGGGAGGCTCGAGAGGGAGAGGAGAGCTACTACTGCCTGGCAGAAAATCAGAAGAAGAGGCCTTGGCCCACGTGGGTCAGAGTGGAAGCCTTTCCCACATGGGGTTCTAACCTTGTTCTCCACACCCAGGGCACGGAAGGCGGATTATTGCCAAAAAACCCTGGCCTCTCTGCCACCCACTCCAGCCCTCCACCCTTAACCCTTTCCCCTCCAG
Seq C2 exon
GTGTGTAGCCAGAGAAGAGTGCTGAGGGAAGGTGGTGCTGAAGGAGCTGGAAACCAACAAAGCCTTGGAGTTAGAGAGCAGACCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040364:ENSMUST00000040636:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types