MmuEX0041446 @ mm10
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26409431-26412114:-
Coord C1 exon
chr2:26412014-26412114
Coord A exon
chr2:26411087-26411169
Coord C2 exon
chr2:26409431-26410953
Length
83 bp
Sequences
Splice sites
3' ss Seq
AGCTCTTTTGACCTTGACAGAAT
3' ss Score
6.33
5' ss Seq
AAGGTCTTG
5' ss Score
0.24
Exon sequences
Seq C1 exon
CTCTCCTCCACCATCTTTTGAAGAAGTATAGTCTGGCTTCTGTGGAGGGGACGAGCTCTAGGCAAGCATCTTTATTTTGGGGGACAAGGGACTTAAACCAG
Seq A exon
AATTGGCAGAACAAAAACAAATCATGTCTGCAGTGCTGTGGGCTAGGAAATGCTGAGCAGCAGGAACTTGGCACATACAGAAG
Seq C2 exon
GCTTCTGTCACCTCGGGAAATTCAAGGCCAGGGAGGATTGGCCAAAGAAAATATGCGGCATTGAACTAGGATTGCTGCTGGATTCTTATTTGGAACCCTGAGATGATTAGATAACTGTTCTTCACCAAGAACCAACTAGCTGCCTCAGGTCTCGTGGATCCCAGATGGACATGGCAGTAACTCAGAGCCGGTCATACTGTGTGTCTCCTTCCTTGCAGCCTATGTATATGAATGATTGAAAAATTGATTTCAAGGTTCCTTTCAAATGCTGGATAGAATGAATCTAATTCAAAGTCTTTTATGTAAAAGAACAATGTTTCTTTTTTAGTCACTTTAGACAAATTAAGGTTTGAGCCACTTGAGAATATCCCCGCAGAGAGGCTAGGCAGGGATTCACTACAGGAGAGCACAGTTACTTGGACACCAAGGCCTTTCTCACCTGAGAAATGGTGCAAACCAACCAGGGATCCTTAGGCTACTGAGAAGGCTGTCTGCTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'57-64,'57-63,58-64
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.179 C2=0.986
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000114082fB3609
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTTTGGGGGACAAGGGAC
R:
CCTGAGGCAGCTAGTTGGTTC
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types