MmuEX0041454 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159454916-159459635:+
Coord C1 exon
chr1:159454916-159454984
Coord A exon
chr1:159456732-159456812
Coord C2 exon
chr1:159459295-159459635
Length
81 bp
Sequences
Splice sites
3' ss Seq
GGATCCTTGTATGGCACTAGGGG
3' ss Score
3.17
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGCCTCTTCCCAGGGAGATCAAAAGCATCATCGAAGCCACTGGTGAGCCAGTCCTCACGGCCTAGCGTG
Seq A exon
GGGTATTGAGCCTTTCCTGGAATTGCTGGCAAAGTTTTCAATACGACTGAGTATTTCAAGGAAGTAAGCTGGCACAGAGAG
Seq C2 exon
GAAATTAAAGTAACTACATAACAGCCTCAAGACCCAACGGGGAAAATCAAAGGGCCAGAGATGGAACCTTGGGTTCCCCAGACACAAGGAAGGACCACGGGACCATCAAGGGATACAAATAGAGGACTTCAGAGTGGACATTATAGACCCCGTCTGCATTCTCAGTACAGTGGAGATAAGTACCACCAATGGCAAGATGCCCACAAGAACTCAAAGTCACAGCAGGACCTCAGGGATGACCACCAACAGTCTCACTCTGTATCCAGGAGTGGGGAGTGGTCCCAGCCTGTGTCTGGTGCTGACTACTTGAAAGGATCTTATCCCAGTCACCTGTACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'5-5,'5-4,8-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.926
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTTCCCAGGGAGATCAA
R:
CGTGGTCCTTCCTTGTGTCTG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: