MmuEX0041575 @ mm10
Exon Skipping
Gene
ENSMUSG00000029189 | Sel1l3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:MGI Symbol;Acc:MGI:1916941]
Coordinates
chr5:53199901-53213452:-
Coord C1 exon
chr5:53213130-53213452
Coord A exon
chr5:53200651-53200778
Coord C2 exon
chr5:53199901-53200471
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCCTATTACTTTTTGCCAGGGA
3' ss Score
6.79
5' ss Seq
TGTGTATGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
TGGCGGCGGCGGGTCCGGTGGCAGCGGCAGGTGGCCCCGCGCGCGGCGGGCCGCCGGCCGGGGGCGGGAGGGAAGGTGGCGCCTCGGGCGGGGGCCGGTCCCTGCACCAGGTGACCTGTTCCGGCCGGGATCCGGGCGGCCTCGCCATGCAGTGGCGCGGCGCGGGGCTTTGGTGGCCACGGCGGCGACAGCAGCAGCAGCAGCAGCAGCCCCCGCCGCCCGCTTTCGGTCCCCCGGCCGCAGCCATGGTCCCCCCGAGCCGCGGTGTCTCCCCGGGCCTCGGCGGCCGCCCTACCAGCGCATTGCTCTTTCTCTGCTACCTG
Seq A exon
GGACCAGCCTCATCCTTCGGAAGCCAGCTCGGGAATGATTGGCACACAGCTTTGAAAGCCACATTTTGATCAGCAGATGTTCCTGAGCCTAGAGAGAGAGTTCAGCATGGCCCAGTCTTCATTTGTGT
Seq C2 exon
AATTTTGTGCCATCGTTGGGCAGGCAGACTTCCCTGACGACATCAGTGCTGCCCAGGACAGAACAGAGCACAACGTATGCAGACTTTATTTATTTTACTGCCTTTGAAGGGAGCGTGCGCAATGTCTCTGAAGTCTCCGTGGAGTATTTATGCTCTCAGCCTTGTGTTGTCCATTTGGAGGCGGTTGTCTCCTCCGAGTTCAGAAGCAGCATCCCCGTGTACAAGAAGAGGTGGAGGAATGAGAAGCATCTTCACACCAGCAGGACGCAGACAGTGCACGTGAAGTTCCCGAGCATCATGGTGTACAGGGATGACTATTTGATCAGACACCCCATCTCGGTGTCCACGGTGATTCTCCGAGCCTGGATTACTCACTGGCACAGCGGCGGGGGCTTGAACGTCCGAGGGGAGGAGAATTTGCTGCACGCAGTAGCGAAGAATTACACCCTGCTGCAGACGGTCCCGCCTTTTGAACGGCCTTTCAAAGATCATCAGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029189-'1-3,'1-2,5-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.534 A=0.045 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCATTGCTCTTTCTCTGCT
R:
GGGGATGCTGCTTCTGAACTC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types