MmuEX0041575 @ mm9
Exon Skipping
Gene
ENSMUSG00000029189 | Sel1l3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:MGI Symbol;Acc:MGI:1916941]
Coordinates
chr5:53591140-53604691:-
Coord C1 exon
chr5:53604369-53604691
Coord A exon
chr5:53591890-53592017
Coord C2 exon
chr5:53591140-53591710
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCCTATTACTTTTTGCCAGGGA
3' ss Score
6.79
5' ss Seq
TGTGTATGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
TGGCGGCGGCGGGTCCGGTGGCAGCGGCAGGTGGCCCCGCGCGCGGCGGGCCGCCGGCCGGGGGCGGGAGGGAAGGTGGCGCCTCGGGCGGGGGCCGGTCCCTGCACCAGGTGACCTGTTCCGGCCGGGATCCGGGCGGCCTCGCCATGCAGTGGCGCGGCGCGGGGCTTTGGTGGCCACGGCGGCGACAGCAGCAGCAGCAGCAGCAGCCCCCGCCGCCCGCTTTCGGTCCCCCGGCCGCAGCCATGGTCCCCCCGAGCCGCGGTGTCTCCCCGGGCCTCGGCGGCCGCCCTACCAGCGCATTGCTCTTTCTCTGCTACCTG
Seq A exon
GGACCAGCCTCATCCTTCGGAAGCCAGCTCGGGAATGATTGGCACACAGCTTTGAAAGCCACATTTTGATCAGCAGATGTTCCTGAGCCTAGAGAGAGAGTTCAGCATGGCCCAGTCTTCATTTGTGT
Seq C2 exon
AATTTTGTGCCATCGTTGGGCAGGCAGACTTCCCTGACGACATCAGTGCTGCCCAGGACAGAACAGAGCACAACGTATGCAGACTTTATTTATTTTACTGCCTTTGAAGGGAGCGTGCGCAATGTCTCTGAAGTCTCCGTGGAGTATTTATGCTCTCAGCCTTGTGTTGTCCATTTGGAGGCGGTTGTCTCCTCCGAGTTCAGAAGCAGCATCCCCGTGTACAAGAAGAGGTGGAGGAATGAGAAGCATCTTCACACCAGCAGGACGCAGACAGTGCACGTGAAGTTCCCGAGCATCATGGTGTACAGGGATGACTATTTGATCAGACACCCCATCTCGGTGTCCACGGTGATTCTCCGAGCCTGGATTACTCACTGGCACAGCGGCGGGGGCTTGAACGTCCGAGGGGAGGAGAATTTGCTGCACGCAGTAGCGAAGAATTACACCCTGCTGCAGACGGTCCCGCCTTTTGAACGGCCTTTCAAAGATCATCAGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029189-'0-2,'0-1,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.576 A=0.045 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCATTGCTCTTTCTCTGCT
R:
GGGGATGCTGCTTCTGAACTC
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: