MmuEX0041595 @ mm9
Exon Skipping
Gene
ENSMUSG00000034684 | Sema3f
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:MGI Symbol;Acc:MGI:1096347]
Coordinates
chr9:107592017-107594618:-
Coord C1 exon
chr9:107594499-107594618
Coord A exon
chr9:107593461-107593546
Coord C2 exon
chr9:107592017-107592110
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCCCACCCCTTCCCCTGCAGTGC
3' ss Score
9.94
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GGAGAGTGTGGTAACTTCGTCCGGCTCATCCAGCCTTGGAACCGAACACACCTGTATGTGTGTGGGACCGGTGCCTACAACCCCATGTGCACCTATGTGAACCGTGGCCGTCGCGCACAG
Seq A exon
TGCCCTCAGGTTCTGAAAGCAGCTCCAGCTGGACTCTTGTCAGCCTCAGTGGGACCCCTGCAGGCAAGGAATCCTGAAGCCACCAG
Seq C2 exon
GATTACATCTTCTACCTGGAGCCTGAGAAACTGGAGTCAGGAAAAGGCAAATGTCCCTATGACCCCAAGCTGGACACAGCCTCAGCCCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034684_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.207 C2=0.229
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(31.7=100)
A:
PF0140314=Sema=PD(21.1=89.7)
C2:
PF0140314=Sema=FE(6.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTGGAACCGAACACAC
R:
TGTGTCCAGCTTGGGGTCATA
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: