MmuEX0041594 @ mm9
Exon Skipping
Gene
ENSMUSG00000034684 | Sema3f
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:MGI Symbol;Acc:MGI:1096347]
Coordinates
chr9:107592017-107594618:-
Coord C1 exon
chr9:107594499-107594618
Coord A exon
chr9:107593687-107593779
Coord C2 exon
chr9:107592017-107592110
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTAACATCTATCTTCCCAGGCC
3' ss Score
8.45
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGAGAGTGTGGTAACTTCGTCCGGCTCATCCAGCCTTGGAACCGAACACACCTGTATGTGTGTGGGACCGGTGCCTACAACCCCATGTGCACCTATGTGAACCGTGGCCGTCGCGCACAG
Seq A exon
GCCCTACCGTGGACCCAGATGCAGGTGGTCAGAGGCCGAGGCAGCAGGGCCACCGATGGTGCCGACCGCCCGACGCCCACAGCCCCACGCCAG
Seq C2 exon
GATTACATCTTCTACCTGGAGCCTGAGAAACTGGAGTCAGGAAAAGGCAAATGTCCCTATGACCCCAAGCTGGACACAGCCTCAGCCCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034684_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.419 C2=0.229
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(31.7=100)
A:
PF0140314=Sema=FE(6.3=100)
C2:
PF0140314=Sema=FE(6.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTTGGAACCGAACACAC
R:
TGTGTCCAGCTTGGGGTCATA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: