DreEX0065065 @ danRer10
Exon Skipping
Gene
ENSDARG00000055373 | sema3fb
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb [Source:ZFIN;Acc:ZDB-GENE-050513-2]
Coordinates
chr11:35223713-35233331:-
Coord C1 exon
chr11:35233212-35233331
Coord A exon
chr11:35228721-35228810
Coord C2 exon
chr11:35223713-35223806
Length
90 bp
Sequences
Splice sites
3' ss Seq
GATACTGTGCTCTGTTTTAGACG
3' ss Score
8.16
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GGCGAGTGTGGTAATTTCATCCGTCTGATCGAGCCATGGAACAGGACGCACTTATATATTTGTGGGACGGGCGCCTACAACCCCGTGTGCACTTATGTGAACAGAGGACGCAAGCCTATG
Seq A exon
ACGGCCATGCATCTGCAGATGCCCCAGACCAGAGGCAGAGCTAGTCGTGCAGCTGAGCCTGAAACAGTGTTTGATGAGACAGGACTGCAG
Seq C2 exon
GAATACGTGTTCCATTTGGAGCCCGGCAAGGAAGATTCTGGGAAGGGAAAGTGCCCGTATGATCCAAAACTGAACAGCGTCTCTGCTTTGATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055373_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.633 C2=0.156
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.3=100)
A:
PF0140314=Sema=FE(6.1=100)
C2:
PF0140314=Sema=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGTCTGATCGAGCCATG
R:
GGATCATACGGGCACTTTCCC
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]