BtaEX0031858 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018307 | SEMA3F
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr22:50739807-50742467:-
Coord C1 exon
chr22:50742348-50742467
Coord A exon
chr22:50741534-50741626
Coord C2 exon
chr22:50739807-50739900
Length
93 bp
Sequences
Splice sites
3' ss Seq
CATGTTCCTCATCTTCTCAGGCC
3' ss Score
9.1
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGTGAGTGCGGGAACTTCGTCAGGCTCATCCAGCCCTGGAACCGAACACACCTGTACGTGTGTGGCACCGGAGCCTACAACCCCGTGTGCGCCTATGTAAACCGTGGCCGCCGCGCGGAG
Seq A exon
GCCACTCCCTGGACCCAGATGCAGGTGGTCAGAGGCCGAGGCAGCAGAGCCACCGATGGCGCCCTCTACCCGACGCCCACAGCCCCACGCCAG
Seq C2 exon
GATTACGTCTTCTACCTGGAGCCTGAGAAGCTCGAGTCAGGGAAGGGCAAGTGTCCCTACGACCCCAAGCTGGACACAGCCTCAGCCCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018307_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.290 C2=0.062
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.2=100)
A:
PF0140314=Sema=FE(6.3=100)
C2:
PF0140314=Sema=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTTCGTCAGGCTCATCC
R:
TCGTAGGGACACTTGCCCTTC
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development