GgaEX1056952 @ galGal4
Exon Skipping
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3178424-3181708:+
Coord C1 exon
chr12:3178424-3178543
Coord A exon
chr12:3179418-3179507
Coord C2 exon
chr12:3181615-3181708
Length
90 bp
Sequences
Splice sites
3' ss Seq
GCCCTGCTCCTTCTCCCCAGGGC
3' ss Score
11.88
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGGGAGTGTGGCAACTTCATCCGCCTGATCCAGCCCTGGAACCGGACTCACCTCTACGTGTGCGGCACCGGCGCCTACAACCCCATCTGCGCCTTCATCAACCGTGGGCGCAAAGCACAG
Seq A exon
GGCTTTCCGCCGAGCCAGCCCCTCCAGCCGGGAGGCCGGGAGAGCAGAGCCGCCGACGGCCCCCGCAGCCCGAGACCAGCAGAAAGCAAG
Seq C2 exon
GATTATATCTTCTACCTAGAGCCGGACAAGCTGGAGTCAGGCAAAGGGAAGTGTTCTTATGACCCCAAAGTGGACACCGTCTCTGCATTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.800 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
PF0140314=Sema=FE(6.1=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Inclusion Isoform:
ENSGALT00000021814fB12644
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCGGACTCACCTCTAC
R:
CAGAGACGGTGTCCACTTTGG
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]