Special

ENSG00000001617 @ hg38

Biotype
protein_coding
Gene Symbol
SEMA3F
Description
semaphorin 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr3:50155045-50189075:+
Assembly
hg38
Other assemblies
hg19

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
91.98
67.7
0
Alternative 5'ss
279
chr3:50155565-50155843
+
8.02
67.7
0
Alternative 5'ss
65
chr3:50184731-50184795
+
11.7
59.7
0
Alternative 5'ss
84
chr3:50184731-50184814
+
88.26
59.7
0
Exon Skipping
93
chr3:50175096-50175188
+
44.05
90.91
0
Exon Skipping
158
chr3:50185889-50186046
+
96.58
72.53
0
Exon Skipping
140
chr3:50182644-50182783
+
96.29
100
0
Exon Skipping
115
chr3:50182904-50183018
+
99.01
31.11
0
Intron Retention
1579
chr3:50175189-50176767
+
12.34
54.81
0
Intron Retention
240
chr3:50182404-50182643
+
7.43
50.82
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000034684 Sema3f 1-to-1
Mouse mm9 ENSMUSG00000034684 Sema3f 1-to-1
Rat rn6 ENSRNOG00000017704 Sema3f 1-to-1
Cow bosTau6 ENSBTAG00000018307 SEMA3F 1-to-1
Chicken galGal4 ENSGALG00000013370 Sema3F 1-to-1
Chicken galGal3 ENSGALG00000013370 Q8AXA8_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000011163 sema3fa 1-to-2
Zebrafish danRer10 ENSDARG00000055373 sema3fb 1-to-2
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