HsaEX0057076 @ hg38
Exon Skipping
Gene
ENSG00000001617 | SEMA3F
Description
semaphorin 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr3:50185666-50186348:+
Coord C1 exon
chr3:50185666-50185707
Coord A exon
chr3:50185889-50186046
Coord C2 exon
chr3:50186281-50186348
Length
158 bp
Sequences
Splice sites
3' ss Seq
GGCCCTACCCTTTGCCCCAGCAA
3' ss Score
4.54
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
Exon sequences
Seq C1 exon
GATCCAGCACCCGTCAAGACCATGACCATCTCTTCTAAGAGG
Seq A exon
CAACAACTCTACGTGGCGTCAGCCGTGGGTGTCACACACCTGAGCCTGCACCGCTGCCAGGCGTATGGGGCTGCCTGTGCTGACTGCTGCCTTGCCCGGGACCCTTACTGTGCCTGGGATGGCCAGGCCTGCTCCCGCTATACAGCATCCTCCAAGAG
Seq C2 exon
GCGGAGCCGCCGGCAGGACGTCCGGCACGGAAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000001617_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.7=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGCACCCGTCAAGAC
R:
CATTGGAGTTGAACCCACGGC
Band lengths:
110-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development