GgaEX7007713 @ galGal4
Exon Skipping
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3185231-3185764:+
Coord C1 exon
chr12:3185231-3185272
Coord A exon
chr12:3185472-3185629
Coord C2 exon
chr12:3185697-3185764
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGTCCCCCCAACAGCAA
3' ss Score
9.3
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTGCCAGCACCCATCAAGATGATGACCATCTCCTCCAAGAGG
Seq A exon
CAACAGCTTTACGTGTCCTCGGCAGTAGGAGTGACCCACCTGGCCCTGCACCGGTGTGACGTGTATGGAGAAGCCTGTGCTGACTGCTGCCTGGCCCGCGACCCATACTGTGCCTGGGATGGCAAGGCCTGCAGCCGCTACTCAGCATCCTCCAAGAG
Seq C2 exon
GCGGAGCAGGCGGCAGGACGTCCGGCACGGCAACCCCATGCGCCAGTGCCGAGGCTACAACTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370-'25-33,'25-28,26-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.833
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(61.4=66.0)
C2:
PF0143720=PSI=PD(36.8=87.5),PF0768612=V-set=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCACCCATCAAGATGAT
R:
CATTGGAGTTGTAGCCTCGGC
Band lengths:
108-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]