BtaEX6095225 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018307 | SEMA3F
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr22:50734638-50735293:-
Coord C1 exon
chr22:50735252-50735293
Coord A exon
chr22:50734908-50735065
Coord C2 exon
chr22:50734638-50734705
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCCCCTACCCCTGCCCACAGCAA
3' ss Score
8.13
5' ss Seq
GAGGTGCAG
5' ss Score
2.03
Exon sequences
Seq C1 exon
GACCCAGCACCTGTTAAGACCATGACCATCTCTTCCAAGAGG
Seq A exon
CAACAACTGTACGTGGCCTCAGCCGTGGGCGTCACACAGCTGAGCCTGCACCGCTGTCAGGCATATGGGGCCGCCTGTGCCGACTGCTGCCTCGCCCGGGACCCCTACTGCGCCTGGGATGGCCAAGCCTGTTCCCGCTACACAGCGTCCTCTAAGAG
Seq C2 exon
GCGGAGCCGCCGGCAGGATGTCCGGCACGGGAACCCCATCCGGCAGTGCCGTGGGTTCAATTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018307-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.7=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGCACCTGTTAAGACCA
R:
ATTGGAATTGAACCCACGGCA
Band lengths:
108-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]