MmuEX6068707 @ mm9
Exon Skipping
Gene
ENSMUSG00000034684 | Sema3f
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:MGI Symbol;Acc:MGI:1096347]
Coordinates
chr9:107586304-107586922:-
Coord C1 exon
chr9:107586881-107586922
Coord A exon
chr9:107586553-107586710
Coord C2 exon
chr9:107586304-107586371
Length
158 bp
Sequences
Splice sites
3' ss Seq
GCTCCTGCTCCTGCTCCCAGCAA
3' ss Score
6.48
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAACCAGCACCTGTTAAGACCATGACCATCTCTTCCAAGAGG
Seq A exon
CAACAACTGTATGTGGCCTCAGCCGTGGGTGTCACACACCTGAGCCTGCACCGCTGCCAGGCCTATGGAGCTGCCTGTGCCGACTGCTGCCTTGCCCGCGATCCCTACTGTGCCTGGGATGGCCAGGCCTGCTCTCGCTACACAGCATCCTCCAAGAG
Seq C2 exon
GCGGAGTCGCCGGCAAGATGTCCGCCACGGGAACCCTATCAGACAGTGCCGTGGTTTCAATTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034684-'25-20,'25-19,26-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.7=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGCACCTGTTAAGACCA
R:
TGGAATTGAAACCACGGCACT
Band lengths:
106-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: