RnoEX0079292 @ rn6
Exon Skipping
Gene
ENSRNOG00000017704 | Sema3f
Description
semaphorin 3F [Source:RGD Symbol;Acc:1308514]
Coordinates
chr8:116442620-116443208:-
Coord C1 exon
chr8:116443167-116443208
Coord A exon
chr8:116442841-116442998
Coord C2 exon
chr8:116442620-116442687
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGCTCCCACTCCCAGCAA
3' ss Score
7.87
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GAGCCAGCACCTGTTAAAACTATGACCATCTCTTCCAAGAGG
Seq A exon
CAACAACTGTATGTGGCCTCCGCCGTGGGCGTCACACACCTGAGCCTGCACCGCTGTCAGGCCTATGGAGCTGCCTGTGCTGACTGCTGCCTCGCCCGAGATCCCTACTGTGCCTGGGATGGCCAGGCCTGCTCTCGCTACACAGCATCCTCCAAGAG
Seq C2 exon
GCGGAGTCGCCGACAAGATGTCCGCCACGGGAACCCCATCAGGCAGTGCCGTGGTTTCAATTCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017704-'26-23,'26-22,27-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.7=100)
A:
PF0143720=PSI=PU(66.0=66.0)
C2:
PF0143720=PSI=PD(32.1=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGCACCTGTTAAAACT
R:
TGGAATTGAAACCACGGCACT
Band lengths:
107-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]