MmuEX0041614 @ mm10
Exon Skipping
Gene
ENSMUSG00000025207 | Sema4g
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:MGI Symbol;Acc:MGI:1347047]
Coordinates
chr19:44989101-44992638:+
Coord C1 exon
chr19:44989101-44989357
Coord A exon
chr19:44991173-44991358
Coord C2 exon
chr19:44992138-44992638
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCCTCTCTTTACAGCCG
3' ss Score
12.76
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGAAGAAAGGGGACGCCAGGAGCCGTGGGCCTCGAGCATCTCCCACAAATCGGGTCTATTGTGCGTGGTGGGGGTCGCAAAGGAGGGCGGGCACCCTTCCCCGCCCCCGCCTCTGGCCCGCCTCCGGCCCCCGCCCCACCCCCGGCTCCGCCTCCACCCCGCCTCGCTCCGGCCGCAGCCCCTTCCTCCTGCAGCTGGTGCTGTGGGGCCGCGAGCCGCACGTCGCTGTCTCTATGGACCCGGATCCCAGCGCAAAG
Seq A exon
CCGGATGGTTAATATTTGACCCAGAAGGAAAAGGAGAGGCCAGTGACACCCTCTGACCCTGCCTATGGCTGTCTGATGACATTGGGTAGATCAGGCAGCCTCCACATCTGGCCCAGCCAAGGAAATCTCCGGAAGTTCCCTGGCCTATCAATGGCCTCCACCTCAGGCGCGGTTCTAGTCTTTAAG
Seq C2 exon
AGAACAGACAGAGACCTGGAACTTGCCCTGAGACTGGGGGCAAGGTGACCCCTTCAGAACCCTACAGTCCTCCTGGGACCCTACACTGCTCACTCTCCATGGAATTTGCATTTGATACAGAAAGGCACGTGGTGACCCGCCCTTCCCTCTGACTTCTTACCTGTGATTCCATGGCCACACAACCCTGTGGCTCCATGTCCCCCCCATTCCATGATCCTCCATGGCCCCATGACTACTTGACCCCCATGACCTCATGACCCCTGACCCCCATGAGATCACACCCTGGACTTTGAACCCAGTGACTGCTCTTCCCCTCCCCTCCTGTGACTCTCCTGGGCTGCCCTCGGGGTCTTGTTGGTCTGAACTTCCGCAGGAAGATGTGGGGGAGGCTCTGGCCCCTCCTCTTCAGCTTTCTCACAGTAACAGCAGTGCCTGGACCCTCACTGCGGAGACCATCCCGAGAGCTAGATGCCACCCCACGGCTGACCATCTCCTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025207_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.119
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCTCTATGGACCCGGAT
R:
TGGAGGATCATGGAATGGGGG
Band lengths:
254-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types