MmuEX0041614 @ mm9
Exon Skipping
Gene
ENSMUSG00000025207 | Sema4g
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:MGI Symbol;Acc:MGI:1347047]
Coordinates
chr19:45063591-45067128:+
Coord C1 exon
chr19:45063591-45063847
Coord A exon
chr19:45065663-45065848
Coord C2 exon
chr19:45066628-45067128
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCCTCTCTTTACAGCCG
3' ss Score
12.76
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGAAGAAAGGGGACGCCAGGAGCCGTGGGCCTCGAGCATCTCCCACAAATCGGGTCTATTGTGCGTGGTGGGGGTCGCAAAGGAGGGCGGGCACCCTTCCCCGCCCCCGCCTCTGGCCCGCCTCCGGCCCCCGCCCCACCCCCGGCTCCGCCTCCACCCCGCCTCGCTCCGGCCGCAGCCCCTTCCTCCTGCAGCTGGTGCTGTGGGGCCGCGAGCCGCACGTCGCTGTCTCTATGGACCCGGATCCCAGCGCAAAG
Seq A exon
CCGGATGGTTAATATTTGACCCAGAAGGAAAAGGAGAGGCCAGTGACACCCTCTGACCCTGCCTATGGCTGTCTGATGACATTGGGTAGATCAGGCAGCCTCCACATCTGGCCCAGCCAAGGAAATCTCCGGAAGTTCCCTGGCCTATCAATGGCCTCCACCTCAGGCGCGGTTCTAGTCTTTAAG
Seq C2 exon
AGAACAGACAGAGACCTGGAACTTGCCCTGAGACTGGGGGCAAGGTGACCCCTTCAGAACCCTACAGTCCTCCTGGGACCCTACACTGCTCACTCTCCATGGAATTTGCATTTGATACAGAAAGGCACGTGGTGACCCGCCCTTCCCTCTGACTTCTTACCTGTGATTCCATGGCCACACAACCCTGTGGCTCCATGTCCCCCCCATTCCATGATCCTCCATGGCCCCATGACTACTTGACCCCCATGACCTCATGACCCCTGACCCCCATGAGATCACACCCTGGACTTTGAACCCAGTGACTGCTCTTCCCCTCCCCTCCTGTGACTCTCCTGGGCTGCCCTCGGGGTCTTGTTGGTCTGAACTTCCGCAGGAAGATGTGGGGGAGGCTCTGGCCCCTCCTCTTCAGCTTTCTCACAGTAACAGCAGTGCCTGGACCCTCACTGCGGAGACCATCCCGAGAGCTAGATGCCACCCCACGGCTGACCATCTCCTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025207_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.119
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCTCTATGGACCCGGAT
R:
TGGAGGATCATGGAATGGGGG
Band lengths:
254-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: