MmuEX0041863 @ mm10
Exon Skipping
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95349839-95354693:-
Coord C1 exon
chr3:95354542-95354693
Coord A exon
chr3:95353415-95353490
Coord C2 exon
chr3:95349839-95349873
Length
76 bp
Sequences
Splice sites
3' ss Seq
GACATGCTTTCTCTGTGCAGCCC
3' ss Score
9.21
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGAAGTGACTAACTGTGAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGACTACAGTATCATGACAGTAGCTCTGAGGATGAAGCTTCCCGGCCCACAGAGATCATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
Seq A exon
CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAAGTCACATCAACCTGCCTGCCTCTGGGAAAG
Seq C2 exon
GTGATGCTGGGAGCAGAACTCCAAAAGACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF072276=DUF1423=PD(31.3=69.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000015841fB3649
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAGTCTTTGGTGAAGGA
R:
TCTGGTCTTTTGGAGTTCTGCT
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types