Special

ENSMUSG00000015697 @ mm10

Biotype
protein_coding
Gene Symbol
Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95323525-95357202:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
14.17
33.33
0
Alternative 3'ss
3
chr3:95340063-95340065
-
85.83
33.33
0
Alternative 5'ss
46
chr3:95324779-95324824
-
1.08
52.72
0
Alternative 5'ss
195
chr3:95324630-95324824
-
94.53
52.72
0
Exon Skipping
76
chr3:95353415-95353490
-
1.3
96.76
0
Exon Skipping
687
chr3:95338346-95339032
-
99.62
31.3
0
Intron Retention
1080
chr3:95337266-95338345
-
31.8
77.9
0
Intron Retention
236
chr3:95324394-95324629
-
14.1
56.34
0
Intron Retention
114
chr3:95324191-95324304
-
5.21
89.85
0
Intron Retention
1240
chr3:95354694-95355933
-
9.15
33.33
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000143379 SETDB1 1-to-1
Human hg19 ENSG00000143379 SETDB1 1-to-1
Rat rn6 ENSRNOG00000021143 Setdb1 1-to-1
Cow bosTau6 ENSBTAG00000000098 SETDB1 1-to-1
Chicken galGal4 ENSGALG00000024051 1-to-2
Chicken galGal4 ENSGALG00000029138 1-to-2
Chicken galGal3 ENSGALG00000024051 1-to-2
Zebrafish danRer10 ENSDARG00000099021 setdb1b 1-to-1
Fruitfly dm6 FBgn0086908 egg 1-to-1