MmuALTD0012686-6/6 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95324305-95324841:-
Coord C1 exon
chr3:95324825-95324841
Coord A exon
chr3:95324630-95324824
Coord C2 exon
chr3:95324305-95324393
Length
195 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGA
5' ss Score
3.37
3' ss Seq
TGTCATCTTTAAACTTACAGCAC
3' ss Score
7.68
Exon sequences
Seq C1 exon
GACCAACAAAGCGCCAG
Seq A exon
GTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAAATCAACCCATGGTATTGCCATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGGAGAGTGCACCAGTTCGTAAGAACACACGCCAGTTCTATGATGGTGAAGAGTCTTGCTACATCATTGATGCCAAACTTGAAGGCAACCTAGGCCGCTACCTCAAT
Seq C2 exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAATGTGTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTCTTTGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-43-40,44-40,45-40,46-40,47-40,48-40-6/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(15.5=100)
A:
NA
C2:
PF0085623=SET=FE(6.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types