MmuEX0042192 @ mm9
Exon Skipping
Gene
ENSMUSG00000037062 | Sh3glb1
Description
SH3-domain GRB2-like B1 (endophilin) [Source:MGI Symbol;Acc:MGI:1859730]
Coordinates
chr3:144347972-144355092:-
Coord C1 exon
chr3:144354864-144355092
Coord A exon
chr3:144354422-144354496
Coord C2 exon
chr3:144347972-144348103
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGAAATATTATATTTTGTAGGTA
3' ss Score
4.46
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
Exon sequences
Seq C1 exon
TTTTCCATCCAATTATCTTTCTAACAACAATCAGACCTCTGGGACACCAGTGCCATATGCTTTGTCAAATGCAATTGGTCCTTCTGCCCAGGCTTCAACGGGTAGCCTTGTAATCACCTGTCCTTCTAACCTCAATGACCTTAAAGAATCCAGCAACAACAGGAAGGCTAGGGTCCTCTATGATTATGATGCTGCAAATAGCACTGAACTGTCACTCCTGGCCGATGAG
Seq A exon
GTAATCACTGTGTTCAGTGTCGTTGGAATGGACTCCGACTGGCTAATGGGAGAGAGAGGAAATCAAAAGGGCAAG
Seq C2 exon
TAATATGCAGACTGACGGCCCGGCCTCCCTGGTGTGAAGCATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAACTCTCTGATCCCCGCAGAATCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037062-'11-12,'11-10,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.147 A=0.166 C2=NA
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(40.9=23.4)
A:
PF146041=SH3_9=FE(54.5=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGAAGGCTAGGGTCCTC
R:
AGACATTCTCCAGTGGTGCAC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types