MmuEX0042192 @ mm10
Exon Skipping
Gene
ENSMUSG00000037062 | Sh3glb1
Description
SH3-domain GRB2-like B1 (endophilin) [Source:MGI Symbol;Acc:MGI:1859730]
Coordinates
chr3:144683678-144692128:-
Coord C1 exon
chr3:144691900-144692128
Coord A exon
chr3:144691458-144691532
Coord C2 exon
chr3:144683678-144685139
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGAAATATTATATTTTGTAGGTA
3' ss Score
4.46
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
Exon sequences
Seq C1 exon
TTTTCCATCCAATTATCTTTCTAACAACAATCAGACCTCTGGGACACCAGTGCCATATGCTTTGTCAAATGCAATTGGTCCTTCTGCCCAGGCTTCAACGGGTAGCCTTGTAATCACCTGTCCTTCTAACCTCAATGACCTTAAAGAATCCAGCAACAACAGGAAGGCTAGGGTCCTCTATGATTATGATGCTGCAAATAGCACTGAACTGTCACTCCTGGCCGATGAG
Seq A exon
GTAATCACTGTGTTCAGTGTCGTTGGAATGGACTCCGACTGGCTAATGGGAGAGAGAGGAAATCAAAAGGGCAAG
Seq C2 exon
TAATATGCAGACTGACGGCCCGGCCTCCCTGGTGTGAAGCATGCGGTAGTTCTGAAACAGCTCCCTGGCCAGCAGTGCACCACTGGAGAATGTCTTAGAAATCCAAACTCTCTGATCCCCGCAGAATCAGGAAATCCAGAGGTGGAGTACAGCAGCATGGGCTTTACAAACCCTCAGGGAAGATGATGTGTGTAGAACCTGGTGGGCCACCGTTGTGCAAATTAAAAGAATTCACACAACCTGCACATCATAAATAGTTACTCATTTCTAAGTAACACCATTAGCATTTCTAAAGTACTGAAATGGACCATTCACAGGGAAATTTCTTATGTCCCTTTCATAACTGCCAATTTGACAGCCAAAAGTTTGAGGTTAAGATTTCTGATGAGCATATGAAGCACACATCCCAATACTTTCACCATAGATATAATGGCAATATTTAGAAAAAAAAGTAATTGAGATGATCTTAGTGTTCTATTGCTGTGAAGATGCACCATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037062_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.129 A=0.133 C2=NA
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=23.4)
A:
PF146041=SH3_9=FE(54.5=100)
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAACTGTCACTCCTGGC
R:
CTGCTGTACTCCACCTCTGGA
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types