RnoEX0080498 @ rn6
Exon Skipping
Gene
ENSRNOG00000012957 | Sh3glb1
Description
SH3 domain -containing GRB2-like endophilin B1 [Source:RGD Symbol;Acc:1304859]
Coordinates
chr2:250709439-250716925:-
Coord C1 exon
chr2:250716697-250716925
Coord A exon
chr2:250716259-250716333
Coord C2 exon
chr2:250709439-250710057
Length
75 bp
Sequences
Splice sites
3' ss Seq
GGAAATATTCTATTTTGTAGGTA
3' ss Score
5.47
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
Exon sequences
Seq C1 exon
TTTTCCATCCAATTATGTTTCTAACAACAATCAGACTTCTGGGACACCTGTGCCGTATACTTTGTCAAATACCATTGGTCCTTCTGCTGTGGCTTCAACAGGTAGCCTGGTAATCACCTGTCCTCCTAACCTCAGTGACCTTAAAGACTCCAGCAGCACCAGGAAGGCCAGGGTGCTGTACGATTATGACGCTGCCAACAGTACGGAGCTGTCACTCCTGGCAGACGAG
Seq A exon
GTAATCACTGTGTTCAGTGTCGTTGGAATGGACTCCGACTGGCTAATGGGGGAGAGAGGAAATCAGAAGGGCAAG
Seq C2 exon
TAATACACAGGTTGACGTGTACCGCCTCCCTGATGTGAAGCATGCAGTACTTCTGAAACAGCTCGCTGGCCAGCAGTGCACCACTTGAGAATTTATAAGAAATGCAAACTCTCTGATCCCTGCTGAATAAGAAACTCCAGGGTGGAGTACAGCAACGTGTGTTTTAACAAACCCTCAGGGAACATGATGCATGTAGAACCTGGTGAACCACAGTTGTGCAAATTAAAAGAATTCATGCAACTCTCACATCATAGTTAATTTCTAAATAACACTACTAAAATTGCTAAAGTAATGAAATGGACCATTCACAAGGAAATTTCTTTATGTCCCTTTCATAACTGCCAATTTGACAGCCAAAAGTTTGAGATTAAGATTTCTGATGAGCCTATGGAATACACATCCCTACACTTTCACCATAGGTAGAATGGCAATTTTTAGTAATTGAGATGGTCTTAGTCAGTGTTCCATTGCTGTGAAGAGACACCATAACCACAGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012957_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.234 C2=NA
Domain overlap (PFAM):
C1:
PF0311413=BAR=PD(0.1=0.0),PF146121=Ino80_Iec3=PD(17.1=31.2),PF146041=SH3_9=PU(35.3=23.4)
A:
PF146041=SH3_9=FE(54.5=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGGTAATCACCTGTCCT
R:
ACTGCATGCTTCACATCAGGG
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]