MmuEX0042987 @ mm9
Exon Skipping
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:74093241-74094787:+
Coord C1 exon
chr8:74093241-74093740
Coord A exon
chr8:74094095-74094211
Coord C2 exon
chr8:74094620-74094787
Length
117 bp
Sequences
Splice sites
3' ss Seq
GATGGAGGCTGTCCTTGTAGGAA
3' ss Score
3.87
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
CTCTCTCCACCCCCGGGTGTGAATTTCGACTTTCTCGGAGTCTGGAATGCTGAGAAGCCTCGGGGCTTGGATCTAGGACAAGCTGGATCAGGCAAGCTCCAGCACAGGCAGGCGCTGGGCGGGAGTGGGTCATGGGCGCAGGGATGGGGATCTTGCAGACTTTCTGGGATTTAGCGGGACGGAGCCACACCCCTGGAGCCATAGCCCCGCCTTCAGCACCTGCTTGTTTTCACCGCTTGGTTGCCGTGGAGACTCGTAGGTACCCTGGGCTAGCCGCTCTAGCTTGAGAGTCTCGTTGGGTTGCGGGCTCTCTGGCCCGCGGTTCTTCTCGATGGCCTAAGCCTTCCGGAAGGGGGTCGGCCGGTGCGGAGCCGGGTTGAGGGGCTGAGAGCTTTTGGCCGCGGATTGGAAGGTTTGGGGCGGGACTAGGTGGGCCGCACGGACCGGGCCTCTCTGTGAACAGTGACTGTCGAAGCCTGGAGGCAACGCGGGAGGCTCAG
Seq A exon
GAACACCCAGCCTCTGAGGCCGGATAAGCATGAGGATAACAAGTGAATTTTGAGACACAGAGGAGGGATGAGGCGACATTAGGGCATGGCCTGGACCATTGGCTGCGAAGGGCCTAG
Seq C2 exon
GATGCGGGCTCCTGGAGCAGGAACAGCCTCTGTGGCCTCACTGGCGCTGCTTTGGTTTCTGGGACTTCCGTGGACCTGGAGCGCGGCGGCGGCGTTCTGTGTGTACGTGGGTGGCGGCGGCTGGCGCTTTCTGCGTATCGTCTGCAAGACGGCGAGGCGAGACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808-'4-2,'4-1,5-2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCTTCTCGATGGCCTAAGC
R:
AGTCCCAGAAACCAAAGCAGC
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: