MmuEX0042988 @ mm9
Exon Skipping
Gene
ENSMUSG00000031808 | Slc27a1
Description
solute carrier family 27 (fatty acid transporter), member 1 [Source:MGI Symbol;Acc:MGI:1347098]
Coordinates
chr8:74093241-74103697:+
Coord C1 exon
chr8:74093241-74093740
Coord A exon
chr8:74094620-74094787
Coord C2 exon
chr8:74103303-74103697
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCAGCTGTGTGCTCCGCAGGAT
3' ss Score
9.48
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CTCTCTCCACCCCCGGGTGTGAATTTCGACTTTCTCGGAGTCTGGAATGCTGAGAAGCCTCGGGGCTTGGATCTAGGACAAGCTGGATCAGGCAAGCTCCAGCACAGGCAGGCGCTGGGCGGGAGTGGGTCATGGGCGCAGGGATGGGGATCTTGCAGACTTTCTGGGATTTAGCGGGACGGAGCCACACCCCTGGAGCCATAGCCCCGCCTTCAGCACCTGCTTGTTTTCACCGCTTGGTTGCCGTGGAGACTCGTAGGTACCCTGGGCTAGCCGCTCTAGCTTGAGAGTCTCGTTGGGTTGCGGGCTCTCTGGCCCGCGGTTCTTCTCGATGGCCTAAGCCTTCCGGAAGGGGGTCGGCCGGTGCGGAGCCGGGTTGAGGGGCTGAGAGCTTTTGGCCGCGGATTGGAAGGTTTGGGGCGGGACTAGGTGGGCCGCACGGACCGGGCCTCTCTGTGAACAGTGACTGTCGAAGCCTGGAGGCAACGCGGGAGGCTCAG
Seq A exon
GATGCGGGCTCCTGGAGCAGGAACAGCCTCTGTGGCCTCACTGGCGCTGCTTTGGTTTCTGGGACTTCCGTGGACCTGGAGCGCGGCGGCGGCGTTCTGTGTGTACGTGGGTGGCGGCGGCTGGCGCTTTCTGCGTATCGTCTGCAAGACGGCGAGGCGAGACCTCTT
Seq C2 exon
TGGCCTCTCTGTTCTGATTCGTGTTCGGCTAGAGCTGCGACGACACCGGCGAGCAGGAGACACGATCCCGTGCATCTTCCAGGCTGTGGCCCGGCGACAACCAGAGCGCCTGGCACTGGTGGACGCCAGTAGTGGTATATGCTGGACCTTCGCACAGCTGGACACCTACTCCAATGCTGTAGCCAACCTGTTCCGCCAGCTGGGCTTTGCACCAGGCGATGTGGTGGCTGTGTTCCTGGAGGGCCGGCCGGAGTTCGTGGGACTGTGGCTGGGCCTGGCCAAGGCCGGTGTGGTGGCTGCTCTTCTCAATGTCAACCTGAGGCGGGAGCCCCTGGCCTTCTGCCTGGGCACATCAGCTGCCAAGGCCCTCATTTATGGCGGGGAGATGGCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031808-'4-3,'4-2,7-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0050123=AMP-binding=PU(24.4=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCTCTGTGAACAGTGAC
R:
ACAGGTTGGCTACAGCATTGG
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: