RnoEX6055156 @ rn6
Exon Skipping
Gene
ENSRNOG00000018170 | Slc27a1
Description
solute carrier family 27 member 1 [Source:RGD Symbol;Acc:620927]
Coordinates
chr16:19999112-20009084:+
Coord C1 exon
chr16:19999112-19999287
Coord A exon
chr16:20000946-20001113
Coord C2 exon
chr16:20008690-20009084
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCGTGTTTTCCGCAGGAT
3' ss Score
12.61
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGGACGGACAGGGCAGAGGCACGCAGGGGCGCAGTGAGAAGCGCCTAGGACTTTGCAAAGGGCTCATCCCCTGAAGGGACCCACCAGCTAGGCCCGAGCTCAGAAGTTCCCACTCCAGACTTCTGCGAGAACCCGTGAGGAAGCAGCGAGAACCGGGGGTTTGCAAGCCAGAGAAG
Seq A exon
GATGCGGACTCCGGGAGCAGGAACAGCCTCTGTGGCCTCATTGGGGCTGCTTTGGCTTCTGGGACTTCCGTGGACCTGGAGCGCGGCGGCGGCGTTCGGTGTGTACGTGGGTAGCGGTGGCTGGCGCTTTCTGCGTATCGTCTGCAAGACGGCGAGGCGAGACCTCTT
Seq C2 exon
TGGCCTCTCTGTTCTGATCCGCGTGCGGCTAGAGCTACGACGACACCGGCGAGCAGGAGACACGATCCCACGCATCTTCCAGGCCGTGGCCCAGCGACAGCCGGAGCGCCTGGCGCTGGTAGATGCGAGTAGCGGTATCTGCTGGACCTTCGCACAGCTAGACACCTACTCCAATGCTGTGGCCAATCTGTTCCTCCAGCTGGGCTTTGCGCCAGGCGATGTGGTGGCTGTGTTCCTGGAAGGCCGGCCCGAGTTCGTGGGACTGTGGCTGGGCCTGGCCAAGGCCGGTGTAGTGGCTGCGCTTCTCAATGTCAACCTGAGGCGGGAGCCCCTTGCCTTCTGCTTGGGCACATCAGCTGCCAAGGCCCTCATTTATGGCGGGGAGATGGCAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018170-'6-3,'6-2,15-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0050123=AMP-binding=PU(24.4=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAGAAGTTCCCACTCCA
R:
GTGTCTAGCTGTGCGAAGGTC
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]