HsaEX7010367 @ hg38
Exon Skipping
Gene
ENSG00000130304 | SLC27A1
Description
solute carrier family 27 member 1 [Source:HGNC Symbol;Acc:HGNC:10995]
Coordinates
chr19:17468769-17487335:+
Coord C1 exon
chr19:17468769-17469010
Coord A exon
chr19:17470540-17470707
Coord C2 exon
chr19:17486563-17487335
Length
168 bp
Sequences
Splice sites
3' ss Seq
AGCTCTCTCTGCTTCCCCAGGAT
3' ss Score
9.16
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AACGCTGGAAAGGTCGGCCAAGGAGAGCAGAAAACAAGCAGTGGTGGAGTCGGCAGTGGGGCAGAGGAGGGGGAGCTGGAAGGGAAGGACCCCAAAGCAGAAGCCCGCACAGTAGGCACAGCGCACCCAAGAAGGGTCCAGGAGTCTGCAGAAACAGAAAGGTCCCCGGCCTCAGCCTCCTAGTCCCTGCCTGCCTCCTGCCTGAGCTTCTGGGAGACTGAAGGCACGGCTTGCAGCTTCAG
Seq A exon
GATGCGGGCTCCGGGTGCGGGCGCGGCCTCGGTGGTCTCGCTGGCGCTGTTGTGGCTGCTGGGGCTGCCGTGGACCTGGAGCGCGGCAGCGGCGCTCGGCGTGTACGTGGGCAGCGGCGGCTGGCGCTTCCTGCGCATCGTCTGCAAGACCGCGAGGCGAGACCTCTT
Seq C2 exon
CGGTCTCTCTGTGCTGATCCGCGTGCGCCTGGAGCTGCGGCGGCACCAGCGTGCCGGCCACACCATCCCGCGCATCTTTCAGGCGGTAGTGCAGCGACAGCCCGAGCGCCTGGCGCTGGTGGATGCCGGGACCGGCGAGTGCTGGACCTTTGCGCAGCTGGACGCCTACTCCAATGCGGTAGCCAACCTCTTCCGCCAGCTGGGCTTCGCGCCGGGCGACGTGGTGGCCATCTTCCTGGAGGGCCGGCCGGAGTTCGTGGGGCTGTGGCTGGGCCTGGCCAAGGCGGGCATGGAGGCCGCGCTGCTCAACGTGAACCTGCGGCGCGAGCCCCTGGCCTTCTGCCTGGGCACCTCGGGCGCTAAGGCCCTGATCTTTGGAGGAGAAATGGTGGCGGGTGAGGCCAGGCGTGGGCATCAGGTGGGCGGGGACCCAGGACTGGCCCCTGGGCGGGCGGGGAGATGCTGCGCCCCAGGCCTCGGAAGGCGGCCGCCCTGGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130304-'5-10,'5-6,12-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0050123=AMP-binding=PU(24.4=79.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGACCCCAAAGCAGAAG
R:
TGCACTACCGCCTGAAAGATG
Band lengths:
253-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains