DreEX0072432 @ danRer10
Exon Skipping
Gene
ENSDARG00000006240 | slc27a1a
Description
solute carrier family 27 (fatty acid transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050320-112]
Coordinates
chr3:52290351-52303899:+
Coord C1 exon
chr3:52290351-52290590
Coord A exon
chr3:52290736-52290903
Coord C2 exon
chr3:52303505-52303899
Length
168 bp
Sequences
Splice sites
3' ss Seq
AAAAGTGATAACTGTTTCAGGAT
3' ss Score
3.93
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATAGTTTGTCAAATACATGCTGCACGTGAAGTGAACATATTTACCGCGTACTTTGCTTTTTTAAACACAACTATCCTAGCGAGTTTTCCCTCGCTCTCCGTGTTGTCAGACGCCCGCGTTACTTTTCATAAGGGTCAGTATTTTGGTCATATTTGTGGTCAGTCAACCTCTAACCGCACAGCAAGGTCGTCCCATGTCTTGACAGATCAGGGCTGGCTGAACTCTATCTGTCTACCATAG
Seq A exon
GATGCACTATGTGGCGAGTGGCTCCCTGTCTTTGGGGTCCCTGGGCCTGCTCCGTCTGTTTGGGGCATCCTGGTCCTGGAGCCTGGCAGCAGGTCTGAGTGTTTATTTGGGGACTGGAGGCTGGCGGTACCTGTATGTGGTGGTTCGGACGGCTAAAAGGGACATCAA
Seq C2 exon
TGGTCTTTATGTGCTGCTGAGGGTTAAACTGGCACTATGGCATTATATGCGCAACCGAAACACCATACCCTCCATCTTTGCACAAACTGTGGCTCGGCACCCAGACAAGCCTGCGCTTGTGTATGAAGCCACTGGGGAGACGTGGACTTTCTCCCAGTTAGATCAAATCTCCAATGCTGTGGCCCACTGGGCACTGAGCCAAGGCTGGACCTCAGGAGATGTGGTGGCGCTGTTCATGGAGAGCAGACCCCTTCAGGTGGCACTCTGGCTGGGCCTGGCCAAAGTCGGTGTGGAAGCTGCACTCATTAACTTCAACCTGCGAAGGGATTCGCTCCTGCACTGCGTGGGTGTTTCAGCTTCCAGGGGAATTGTTTTTGGAGCAGAGCTTGCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006240-'1-3,'1-0,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0050123=AMP-binding=PU(24.4=79.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCGTCCCATGTCTTGACA
R:
GGGCCACAGCATTGGAGATTT
Band lengths:
242-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]