BtaEX0032991 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5545318-5571774:-
Coord C1 exon
chr7:5571624-5571774
Coord A exon
chr7:5569889-5570056
Coord C2 exon
chr7:5545318-5545712
Length
168 bp
Sequences
Splice sites
3' ss Seq
AGAGCTCTCCGCCTCCCCAGGAT
3' ss Score
6.68
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GCCTCCTGCCTGAGCTTCTGGGAGCCCACGACCGAGCAGCCAAAGCCTGAGGATCCGTGAGCGGCTCCAGGTCAGCCAGGGAACAAGGTGGTGAGCGGTGAGGACAGCACTAGCCCTCACCTGATCAGCTGGAGGGCTTCAGGGTCTCTAG
Seq A exon
GATGCGAGCTCCGGGTGCAGGTTCGGCTTCCGTGGCCTCTCTGGTGCTGTTATGGTTGCTCGGACTGCCGTGGACCTGGAGCACAGCGGCGGCGCTCGGCGTGTACGTGGGCGGCGGCGGCTGGCGTTTCCTGCGCATCGTCTGCAAAACCGCAAGGCGGGACCTCTT
Seq C2 exon
CGGCCTTTCCGTGCTGATACGCGTGCGCCTGGAGCTGCGGCGGCACCAGCGCGCGCGCCACACCATCCCACAGATCTTCCAGGCGGTGGTTCAGCGGCAGCCCGAGCGCCTGGCGCTAGTGGACGCGGGCAGCGGTGCGTGCTGGACCTTCGCGCAGCTGGATGCCTACTCCAACGCTGTGGCCAACTTGTTCCGCCGGCTGGGCTTCGCGCCGGGCGACGTGGTGGCCATCTTCATGGAGGGCCGGCCTGAGTTTGTGGGGCTTTGGCTGGGCCTGGCCAAGGCAGGCGTGGAGGCCGCGCTGCTCAACGTGAACCTGCGGCGGGAGCCCCTGGCCTTCTGCCTGGGCACCTCGGGCGCCAAAGCCCTGGTCTTCGGAGGGGAGCTGGCGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775_MULTIEX2-1/8=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0050123=AMP-binding=PU(12.8=69.2)
C2:
PF0050123=AMP-binding=PU(24.4=79.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAACAAGGTGGTGAGC
R:
GTTGGAGTAGGCATCCAGCTG
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development