DreEX0072440 @ danRer10
Exon Skipping
Gene
ENSDARG00000104949 | slc27a1b
Description
solute carrier family 27 (fatty acid transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-061013-672]
Coordinates
chr1:57823817-57826281:-
Coord C1 exon
chr1:57826250-57826281
Coord A exon
chr1:57824260-57824433
Coord C2 exon
chr1:57823817-57823955
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATAATGAATTCCTCCTCCAGGAT
3' ss Score
8.28
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ACAAGTGAACGGGCTGATCGGGAGGAGCAAAG
Seq A exon
GATGGGTGCTGGAGATGGTTTTCGTGCCCCAGTCGCTCTGATCATTGCCGGGTTATTGAGTGCTCTGGGCGTCCCGTGGTTCTGGAGTTTGGTGTCTCTTCTAGGAGTTTATTTATGTTCTGGGGGATGGAGGTTTGTTTATGTGGCCGTGCGCACTGCGAAGAGAGACCTCAT
Seq C2 exon
TGGTCTGCAAGTGTTACTGCGCGTCAAGTTCTACATGCGTCAGTACATCCGCAATCGCAGCACCATCCCGTCTCTATTCGCCCAGCGGGTGGCGCTGCACCCGGAGAAAGCGGCGCTGGTGGACGAGTCGTCAGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104949-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTGAACGGGCTGATCG
R:
ACGACTCGTCCACCAGCG
Band lengths:
163-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]