MmuEX0043433 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100795763-100796638:+
Coord C1 exon
chr15:100795763-100795937
Coord A exon
chr15:100796120-100796195
Coord C2 exon
chr15:100796505-100796638
Length
76 bp
Sequences
Splice sites
3' ss Seq
TATGTATCCCTTGTGTTTAGATA
3' ss Score
7.03
5' ss Seq
GAAGTGAGA
5' ss Score
3.22
Exon sequences
Seq C1 exon
GCTGTTTGGGGGCTTGGTGCTGGATGTCAAGCGGAAGGCTCCCTGGTACTGGAGTGACTACCGGGATGCTCTCAGCTTACAGTGTCTGGCCTCCTTCCTGTTCCTGTACTGTGCCTGCATGTCGCCCGTTATCACCTTCGGGGGACTGCTGGGAGAAGCCACTGAAGGACGCATA
Seq A exon
ATATCACTTCGGTGCCTGGTTGCCTAGTTGAGTTGCTCACCACCCCAGGAATGGAAAATGGATCCACTGATAAGAA
Seq C2 exon
AGTGCGATTGAGTCGTTGTTTGGAGCGTCCATGACGGGGATTGCCTACTCTCTGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCACGGGGCCCGTGCTGGTGTTTGAAAAGATTTTGTTCAAATTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=PD(9.6=77.8)
C2:
PF0095516=HCO3_cotransp=FE(12.9=100)
Main Inclusion Isoform:
ENSMUST00000023776fB3790
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTACCGGGATGCTCTCAG
R:
AGAGAGTAGGCAATCCCCGTC
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types