Special

MmuEX0043433 @ mm9

Exon Skipping

Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100626194-100627069:+
Coord C1 exon
chr15:100626194-100626368
Coord A exon
chr15:100626551-100626626
Coord C2 exon
chr15:100626936-100627069
Length
76 bp
Sequences
Splice sites
3' ss Seq
TATGTATCCCTTGTGTTTAGATA
3' ss Score
7.03
5' ss Seq
GAAGTGAGA
5' ss Score
3.22
Exon sequences
Seq C1 exon
GCTGTTTGGGGGCTTGGTGCTGGATGTCAAGCGGAAGGCTCCCTGGTACTGGAGTGACTACCGGGATGCTCTCAGCTTACAGTGTCTGGCCTCCTTCCTGTTCCTGTACTGTGCCTGCATGTCGCCCGTTATCACCTTCGGGGGACTGCTGGGAGAAGCCACTGAAGGACGCATA
Seq A exon
ATATCACTTCGGTGCCTGGTTGCCTAGTTGAGTTGCTCACCACCCCAGGAATGGAAAATGGATCCACTGATAAGAA
Seq C2 exon
AGTGCGATTGAGTCGTTGTTTGGAGCGTCCATGACGGGGATTGCCTACTCTCTGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCACGGGGCCCGTGCTGGTGTTTGAAAAGATTTTGTTCAAATTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'18-15,'18-14,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)

							
A:
PF0095516=HCO3_cotransp=PD(9.6=77.8)

							
C2:
PF0095516=HCO3_cotransp=FE(15.3=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000023776f1399A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000023776





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000023776f1400A, ENSMUSP00000023776f1401A, ENSMUSP00000125090
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:51863767-51863843 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:28498931-28499006 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGACTACCGGGATGCTCTCAG

				
R: 
AGAGAGTAGGCAATCCCCGTC

				
Band lengths: 
174-250

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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