MmuEX0044479 @ mm10
Exon Skipping
Gene
ENSMUSG00000027109 | Sp3
Description
trans-acting transcription factor 3 [Source:MGI Symbol;Acc:MGI:1277166]
Coordinates
chr2:72970155-72979632:-
Coord C1 exon
chr2:72979487-72979632
Coord A exon
chr2:72978898-72979029
Coord C2 exon
chr2:72970155-72971514
Length
132 bp
Sequences
Splice sites
3' ss Seq
AACCCGCCCATCGCGGGTAGGAC
3' ss Score
4.13
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
CTCCCGAAAAGCCCGTGAAACAAGAGGAAATGGCTGCCTTGGACGTGGACGGCGGCGGAGGCGGCGGCGGCCACGGCGAGTATCTACAGCAGCAGCAGCAGCAACAGCAGCAGCACGGAAACGGCGCGGCGGCGGCGGCGGCCCAG
Seq A exon
GACACTCAGCCGTCACCGCTCGCTCTGCTGGCCGCTACCTGCAGCAAGATAGGGCCGCCATCGCCGGGCGACGACGACGAGGAGGCGGCCGTTGCCGCCGCCGCCGGGGTCCCCGCCGCCGCCGCCGGAGCG
Seq C2 exon
ACAGGTGATTTGGCTTCTGCACAGTTAGGAGGAGCACCAAACCGATGGGAGGTTTTGTCAGCTACACCTACAACTATAAAAGATGAAGCTGGTAATCTAGTACAGATTCCAGGTGCTGCTACTTCAAGTGGGCAGTATGTCCTTCCCCTTCAGAATTTGCAGAATCAACAAATATTTTCAGTTGCACCAGGATCAGATTCATCAAATGGCACAGTGTCCAATGTTCAGTATCAAGTAATACCACAAATTCAGTCAACAGACGCTCAGCAGGTTCAGATTGGCTTCACAGGCTCCTCAGATAATGGGGGCATAAATCAAGAAAACAGCCAAATTCAGATCATTCCTGGCTCTAATCAAACCTTACTCGCCTCTGGAACACCTCCTGCTAATATCCAGAATCTCATACCACAGACTGGTCAAGTCCAGGTTCAGGGAGTTGCAATTGGTGGCTCATCATTTCCTGGCCAAACTCAAGTAGTCGCTAATGTGCCTCTTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027109_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.841 C2=0.536
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAAATGGCTGCCTTGG
R:
CCCACTTGAAGTAGCAGCACC
Band lengths:
257-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types