DreEX0074602 @ danRer10
Exon Skipping
Gene
ENSDARG00000001549 | sp3a
Description
sp3a transcription factor [Source:ZFIN;Acc:ZDB-GENE-070410-111]
Coordinates
chr9:2756639-2762251:+
Coord C1 exon
chr9:2756639-2756712
Coord A exon
chr9:2756851-2756961
Coord C2 exon
chr9:2761283-2762251
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTAAACCCGCCCATCTGCAGGAC
3' ss Score
8.19
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CGCCTGAAGGGCCAGTGAAAGCGGGAGTCATGGCGGACAGCAGCAGCGCTCAGGACGGCGGCGGCGCGGAGCAG
Seq A exon
GACGGACAGCCCTCGCCGCTCGCCCTGCTCGCCGCCACTTGCACCGGCCTCGGTTCGCCCGCCCCCGGAGCAGAGAACGGGGCCAGCTCTAATAACGCTTCAGCTGGGGTG
Seq C2 exon
AATGCAGACCTCTCAGATCAGCTAACCAGCTCAACTGAAAGATGGGAAGCTGTACGGGATGATTCAGGTGTCCTGCATCTCCCCGGCACGGGTATCGTCACATCCAACGGACAGTATGTTCTTCCTCTCCAGAGCCTCCAGGGCCTCCAGAACCAGCCCATTTTACTCACGTCGGGGACCGACGCGTCCGCCGGCGCAGTGCCTAACATCCAATACCAAGTCATCCCTCAGGTGCAGACGACTGACGGGCAGTTGGGTTTCTCTGGGGCCTCGATGGCGCAGGACGCCACGGGTCACATCCAGATCCTCCCAGACGGCACCCAGACCATCAGCGTCACGTCCGCCGACGTCCTCAGCAACAGCCAGAGCCTGATGACACAGACAGGCCAAGTGCACCAGATCCCACAGGTGTCTCTGGGAAGCTCTGCGTTCGGCGGGCAGGTCACAAACGTGCCTCTGGGCTTGCCGGGTAACATTACCTTCGTGCCCATAAACAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001549-'1-4,'1-3,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.982 C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGGGCCAGTGAAAGC
R:
ACGTGAGTAAAATGGGCTGGT
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]