MmuEX0044483 @ mm9
Exon Skipping
Gene
ENSMUSG00000048562 | Sp8
Description
trans-acting transcription factor 8 [Source:MGI Symbol;Acc:MGI:2443471]
Coordinates
chr12:120085664-120091051:+
Coord C1 exon
chr12:120085664-120085814
Coord A exon
chr12:120086011-120086127
Coord C2 exon
chr12:120086852-120091051
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCCACTTTTTTTTTTTTCAGCAC
3' ss Score
9.38
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GGAGAGGGAGCTACAATTGTGGCGGAATGGGCGGAACTGATCATTGTATTGCACACCTCTAAAAAAAACACTGCCTCTGATTTATCAATATAAAAAAGATCCTCTGAGAGGAGGAGGGCGCTTCTGTGTGATGGCAACTTCACTTCTAGGG
Seq A exon
CACAGGAAAGGTTCGTAGGGCATTGAGACCCGCCACCTCGCAGAGCCTGGCCGCTCCCTGCTCGGGAGAACTGAGCATAGCCCCTAATACACTCGACGATTTCGAAGGGGAACGCGA
Seq C2 exon
GAAGAACCGAGGTTGGGATCCACTCCTCTGGCCATGCTTGCTGCTACCTGTAATAAGATCGGCAGCCCCAGCCCGTCTCCCTCCTCCCTGTCGGACAGCTCTTCTTCCTTCGGTAAAGGCTTCCACCCTTGGAAACGCTCCTCGTCTTCCTCCTCCGGCAGCTGCAACGTAGTGGGTTCCAGTCTCTCTAGCTTCGGTGTGTCGGGGGCCTCCCGGAACGGCGGCTCCTCCTCAGCCGCAGCGGCGGCAGCGGCGGCAGCAGCGGCGGCCGCAGCCCTGGTGTCCGACTCTTTTAGCTGCGGAGGCTCGCCCGGCTCCAGCGCCTTCTCTCTCACCTCCAGCAGCGCCGCCGCAGCGGCAGCAGCTGCGGCGGCTGCCGCTTCCAGCTCGCCCTTTGCCAACGACTACTCTGTGTTCCAGGCTCCGGGCGTCTCGGGGGGCAGCGGCGGCGGCGGCGGGGGAGGCGGCGGCGGTTCCGGAGCGCACTCGCAGGATAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048562-'1-3,'1-1,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=1.000 C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=4.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGGCGGAACTGATCAT
R:
GGGTGGAAGCCTTTACCGAAG
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: