MmuEX0044484 @ mm9
Exon Skipping
Gene
ENSMUSG00000048562 | Sp8
Description
trans-acting transcription factor 8 [Source:MGI Symbol;Acc:MGI:2443471]
Coordinates
chr12:120086011-120091051:+
Coord C1 exon
chr12:120086011-120086127
Coord A exon
chr12:120086603-120086699
Coord C2 exon
chr12:120086852-120091051
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTGTTAAACTCTTCTTTAGCGT
3' ss Score
6.51
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CACAGGAAAGGTTCGTAGGGCATTGAGACCCGCCACCTCGCAGAGCCTGGCCGCTCCCTGCTCGGGAGAACTGAGCATAGCCCCTAATACACTCGACGATTTCGAAGGGGAACGCGA
Seq A exon
CGTGGCGCTTTGCTCCAGAATCAGACGCTCGCCGCCAAACTTGTCCCCTCCTGTAGAGTAGGAGGCAGCCGGGCGCCGGGGCAGCTGGGGGTGCAGG
Seq C2 exon
GAAGAACCGAGGTTGGGATCCACTCCTCTGGCCATGCTTGCTGCTACCTGTAATAAGATCGGCAGCCCCAGCCCGTCTCCCTCCTCCCTGTCGGACAGCTCTTCTTCCTTCGGTAAAGGCTTCCACCCTTGGAAACGCTCCTCGTCTTCCTCCTCCGGCAGCTGCAACGTAGTGGGTTCCAGTCTCTCTAGCTTCGGTGTGTCGGGGGCCTCCCGGAACGGCGGCTCCTCCTCAGCCGCAGCGGCGGCAGCGGCGGCAGCAGCGGCGGCCGCAGCCCTGGTGTCCGACTCTTTTAGCTGCGGAGGCTCGCCCGGCTCCAGCGCCTTCTCTCTCACCTCCAGCAGCGCCGCCGCAGCGGCAGCAGCTGCGGCGGCTGCCGCTTCCAGCTCGCCCTTTGCCAACGACTACTCTGTGTTCCAGGCTCCGGGCGTCTCGGGGGGCAGCGGCGGCGGCGGCGGGGGAGGCGGCGGCGGTTCCGGAGCGCACTCGCAGGATAGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048562-'2-3,'2-2,3-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTGAGCATAGCCCCT
R:
GGGTGGAAGCCTTTACCGAAG
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types