BtaEX0034183 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002604 | SP8
Description
Sp8 transcription factor [Source:HGNC Symbol;Acc:HGNC:19196]
Coordinates
chr4:29595419-29597808:-
Coord C1 exon
chr4:29597788-29597808
Coord A exon
chr4:29596940-29597169
Coord C2 exon
chr4:29595419-29596786
Length
230 bp
Sequences
Splice sites
3' ss Seq
ATCCAATGGTTTTTCCCCAGGCT
3' ss Score
6.87
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGGCAACTTCACTTCTAGGG
Seq A exon
GCTTCTCCGCAAAGGAATCTTCCTTCCTCCCCAATCTGGACTTTCTGCTTGCTTGTTTGTTTCGAAGTGCCTGGGGCCTTGTGTGCATAAGAGTGTTGTTTTAGGTGAGAATACTTGTCAAACTCTTCTTTAGCGTGGCGCTTTACTCCCGAATCAGACGCCGGCAGCCAAACTTGTCCCCTCCCGTAGAGTAGGAAGCAGCCGGGCGCCGGGGCTGTTGGGGGAGCCAG
Seq C2 exon
GAAGAACCGAGGTTGGGATCGACTCCTTTGGCCATGCTTGCTGCTACCTGTAATAAGATCGGCAGCCCCAGCCCGTCTCCCTCCTCCCTCTCGGACAGCTCATCTTCCTTCGGCAAAGGCTTCCACCCCTGGAAACGGTCCTCGTCCTCTTCCTCAGGCAGCTGCAACGTAGTGGGCTCCAGTCTCTCAAGCTTCGGCGTGTCAGGGCCCTCCAGAAACGGCGGCTCGTCCTCGGCCGCGGCGGCGGCCGCCTCGAGCTCTCCCTTCGCAAACGACTACTCGGTGTTCCAGGCCCCTGGCGTGTCGGGGGGCAGCGGCGGCGGCGGTGGCGGCGGCGGCTCCTCGGCACACTCGCAGGACGGCTCCCACCAGCCCGTGTTCATCTCTAAGGTGCACACCTCTGTGGACGGGCTGCAGGGCATCTACCCGCGCGTAGGCATGGCGCACCCTTACGAGTCGTGGTTCAAGCCCTCGCATCCCGGCCTGGGCGCCGCCGGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002604_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
ENSBTAT00000003368fB6673
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAACTTCACTTCTAGGG
R:
AACACCGAGTAGTCGTTTGCG
Band lengths:
308-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development