HsaEX0061131 @ hg19
Exon Skipping
Gene
ENSG00000164651 | SP8
Description
Sp8 transcription factor [Source:HGNC Symbol;Acc:19196]
Coordinates
chr7:20823906-20826505:-
Coord C1 exon
chr7:20826397-20826505
Coord A exon
chr7:20825567-20825662
Coord C2 exon
chr7:20823906-20825414
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTGTCAAACTCTTCTTTAGCGT
3' ss Score
6.71
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTGTATTGCACACCTCTAAAAAAAACACTGCCTCTGATTTATCAATATAAAAAAGATCCTCTGAGAGGAGGAGGGCACTTTTGTGTGATGGCAACTTCACTTCTAGGG
Seq A exon
CGTGGTGCTTGCTCCCGAATCAGACGCCGGCAGCCAAACTTGTCCCCTCCTGTAGAGTAGGAAGCGGCCGGGCGCCGGGGCTGTTGGGGGTGCCAG
Seq C2 exon
GAAGAACCGAGGTTGGGATCGACTCCTCTGGCCATGCTTGCCGCTACCTGTAATAAGATAGGCAGCCCCAGCCCGTCTCCCTCCTCCCTCTCGGACAGCTCTTCTTCCTTCGGCAAAGGCTTCCACCCCTGGAAACGCTCCTCGTCCTCTTCTTCCGCCAGCTGCAACGTAGTGGGTTCCAGTCTCTCAAGCTTCGGCGTGTCCGGGGCCTCCAGGAACGGCGGCTCGTCCTCGGCGGCTGCGGCGGCCGCGGCAGCAGCCGCGGCTGCCGCGGCCCTGGTGTCCGACTCGTTCAGCTGCGGCGGCTCGCCTGGCTCCAGCGCCTTCTCCCTCACCTCCAGCAGCGCCGCAGCCGCCGCCGCCGCCGCCGCAGCCGCCGCCTCCAGCTCGCCCTTCGCCAACGACTACTCTGTTTTCCAGGCCCCCGGAGTTTCCGGGGGCAGCGGCGGCGGCGGCGGGGGCGGCGGCGGCGGCTCCTCCGCGCACTCGCAGGACGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164651_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=1.000 C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=4.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGGAGGGCACTTTTGT
R:
TTCCAGGGGTGGAAGCCTTT
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)