MmuEX0045201 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86878830-86883855:-
Coord C1 exon
chr10:86883784-86883855
Coord A exon
chr10:86881105-86881191
Coord C2 exon
chr10:86878830-86878949
Length
87 bp
Sequences
Splice sites
3' ss Seq
CACCTTTTGTTCTTATACAGACA
3' ss Score
8.47
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCCGTCTGTAACTGCTTGCCCAAGTACACTGGAGATGGAAAGGTCTGCACACTCATCAACGTCTGCTTAACT
Seq A exon
ACACCTGTGAGTTTAAAAACCTCATCTCAAGACCCTTAATGACATCTACGAAGATCCTTTTCTAAAGAAAGTCACAATCACAGACAG
Seq C2 exon
AATAACGGCGGCTGCAGTCCATTTGCCTTCTGCAATCACACAGAACAAGATCAAAGGACATGTACCTGCAAGCCAGACTACACGGGTGATGGAATCGTCTGCCGTGGCAGCATCCATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(40.5=62.5),PF129472=EGF_3=PU(5.4=8.3)
A:
NO
C2:
PF129472=EGF_3=PD(89.2=82.5)
Main Inclusion Isoform:
ENSMUST00000035288fB3943
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGTAACTGCTTGCCCAA
R:
CAGACGATTCCATCACCCGTG
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types