MmuINT0153427 @ mm10
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86878830-86883855:-
Coord C1 exon
chr10:86883784-86883855
Coord A exon
chr10:86878950-86883783
Coord C2 exon
chr10:86878830-86878949
Length
4834 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CTTCTTGGCAACTTTACCAGAAT
3' ss Score
3.36
Exon sequences
Seq C1 exon
GCCGTCTGTAACTGCTTGCCCAAGTACACTGGAGATGGAAAGGTCTGCACACTCATCAACGTCTGCTTAACT
Seq A exon
GTGAGTATGCTTCCAGGCTGTAGCCTCGGAGCCTTCTCCCACCATCTAAGGGATACAGAGGCCAGGTGCTCTCCCCTTGAATCTCAGAGCTGGGTAATAGGCTCACTTTTCCTCTTGTGTGCCATGGTCATATTGGGAAGGATGGAGAGAACAGAGTCTCTCCACAACCTGTCCCTTTGGCTACAAGATTCAGAAGGGACCTAAGTGCACAGAGTTGCTCTGGCATTCATCTGATGCAAGCGTCCTAAAGCAAGCTGGATTCATTTCCTAAAGTATGGGAGGGGCTATAAAGCATTCGTGAGTCAACTAACAAGCCTTAGGATTTTGTCAAAATCTGGTTCCTAGCCGGAAGTGGTGGCGCACGCCTTTACTTCCAGCACTTGGGAGGCAGAGGCAAGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCACAACAGCCAAGGCTACAGAGAAACCATGTCTCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTGGTTCCTTAGCCAGTGACTGGGTATGCTGCCCGAGTATGGTTTTTGTTTATTCTTTATGTACCTAATGAGGAAGAAAGTCAGTTCAAACATGGACAAACAACAAGAAATTATGCTGTGGAAAAGGAGATGCTGCAGAGACAGCAAGATCAATCAGTGAGCAGGAGTGAGAGGGGTGGGGTGAACAAGGGGAGCATGGGAGTCTTAGGGATAAGAAACTACCGAGAGGAGGCTTAAATAATGGACACATCATTATACACTTGTCAAGCCCCACAGAATGTACACCAGCAGGAGTGGGACAGCATGCAAGCTATGGACTTTAACACCAGTGCCTCAGTCCCAGCAAGTGCAAGGCCTTAGTGATGGGGGAAACCAGGGAGTGGCAGAGTCTCTACAGGAAAGTCTGCACTTTCCACTCTGCTTTCCTGTAAGCCTAAAACAGCTCTTAAAGATTAATTAGTTAAACAAACAAGCAAACAAAACCCTGCAACATTCATATGAAAACAACTGTCCGTTCTTCACCCGTCTTTCACGCAGAACACACATGCACGCATGCACACGCCTGAACATAGCTTCTACTACCCAGACTTGATATATCTTCCCTGAGTAAGCTATCTTCCATGATATTAAGGAGAATGTGCCCAAGAGAGCACACAATTAGTCTAAAAGGTCCTACTTATCTCAGATATGTTATCTTGTATCAGTAAGCATCTAGAGAGATTCCAGGATCCAGGAACACGAATGTCATGACCTCATGGCAGTCCTGTTACGAGCAGCCTGCATCCCTCCCCAAAATATATCTGCTGATTCTCCCATGACTTCTTTTTCTTTTCTTTTTTTTAAAATATTTTTATTATGTATTTTCTTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACCGATTCCCATTTTTTTGGCCCTGGTGTTCCCCTGTGCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTACAGTCAAGAGCTCCGGGGTACTGGTTAGTCCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTAAAGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATACATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCCAGGCCCCGGCATAGTCTCACAAGAGACAGCTATATGGATCTATGCTGTACCAAACAAGCAGGATCTCACTAAGTCTGAAACTGGATAAACTATCTACTGCTGCTCAACCTATCCCAGGCCCAGGCCTCCAGTGGAGTATGCCTGATGCCCTGGCATGTCACATCTGGGACACTGGGGTCATCCAGGCCTCTGACAACCTGGATCAACATGACATTTATACACACTGATGATTTCTCTCATTCAATTCTTCTGCTCCCCAATGAGACAAGGACTAATTACCCCCAACTTGCTGATGAAAAGACTAGCAGTGAATTGTTTTCCAAGGCATTTTAGTTTCATTTCCTATTGCATGATAAAATTACCCTAACACAGCAAACTAGGGCAAAGGGGGTTTATCTGGGTCACAGTTCCAGGTCACAGTCCACCACTGCAGAGAAGTCACAGTGGTGGGAGCTTGAGAGAACTGGTGACATTATATCCACAGCCAAGATCAGAAAGTAATGAATTAATGCATGGTCTCCATTGCTGAGTCTAGATTGACAGTTCAAACTCACCATCAGAATAGGGCTGCTGTAAAATGTAACCATAGGCTAGGTACAAAATTTTATATGTGATTCTTGAATCATAAATCTAAAAGCAGTGTCAGCGAGGATGTTTCTGAAGGCTCTGGGGCAGCCTCCTTGCCTCTTGCAGCTGCTAGTGACTCTGGTATTCCTGGCTGTAGCTGCAAACTACAGTTTATGTCTGTGTCTGTGTCTGTGTGTCTGTGTGTCTGTGTGTCTGTGTATCTGTGTGTCTATGTCTGTCTCTCCCTCTCTCTTTCTCTCTTTCTCACCCTCCCTCTCTCCTTCCACCTTTTGTTCTTATACAGACACCTGTGAGTTTAAAAACCTCATCTCAAGACCCTTAATGACATCTACGAAGATCCTTTTCTAAAGAAAGTCACAATCACAGACAGGTACCTAGGGCTTAAGGACTTAGCCATGTTTGGAGTGGATACAATCTTTCCTGCCTCTGGCTGGCAGGAAAAAAAGATCCTTATCTGAGATCACAGAACTAGAATAAGACAAAACCAGAGCTCGAACCCACAGCTGTCTAACTCTAGGCCTCACTGTAGACCAAGCACCTTGATGCACTGTTTTACGTGTGCACTCCCAGTGGATGCTGGGAGAACCAAATTGACCACTGTAGTTGAACCCTCCCTCACCGAGCAGCTCTCTTTGCCTCCTTGTTTTTGTCTGGCCAGCTCAGGAGAACAGTGATCATAAGGACAATAAAGAAGCTAGGACACAGAGGCAGCTGGGATGTGGGGCTGTTGTTATGAGAATGGCAGCCTAGCCGGCTCTATTTGATAGTGGTTCTGTGTTGTTTTGGCCAAAGACTTAGGACATAGCTGCCAGGGAGGCCCAGAGGCCATTTGCTGCCCTCTTGCAAGCTAATGTTCAGGAATTAGCTCTCAATTCCAAAGTCATTAGGGGCGGAACAGGGAACCCAGCAGGAAGCTGGAAGACTTGGTGCCTCTCTAATGAATGCCATCTCCGGAGCCTCAGATCCCTGATGCTCTGAGTAGTGCCAGCCAGTGTTGGCTGTGTAAGAAGAACAGAAATTTTAATGTGGATTTTTTTTCAGTTTTTAAATGATGGTAATCACTCAGAGGAGAAGGCAAAAACTCTTTAAACATCAGGATAAGCAAACAAAATAGTTGTGGAGCTGCCCAAGGATCATGTGTTTCTCCCCAAGTGCCAAGAGCCAGGCAGTGGGCCCATCTGAGAGGTCGTTCCAAAACAGTCTCTGTCCCTCTAGTGCTGCTGCAACAGAATCCTCAGTAACTGAACAGAAATTTAATTCTCATACTCTAGAAGCCAAGGTCAGGATGCCAGCTTGTGGTACATGCCTTCTTGGTGTGTCATGACAGGCTGAGTGAGCGAAAATGAGGGAAAGGGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCTCGATGCCAGTTTCAAGAGTAGAGAGCACTAGGTGAGGGCAGGAAGGAGTGGGTCAGAGAACAAGTATCCAGAACCACACGGAGTGAGTGCCCTCATGGTGGGGGGGGGGGGATAACCCACAGCCCCTAGACCTCTGGAGTTGACAGAAATCAAGAGGGCTGTGACAAGACCAGACTCTTCTGTATGGTCTTGGAGTTTGCTGGGTATTGCAGCTATCAAAGTTCAGGTTCATTGGCTGGAAGCTTAGGAGCTTGCTTTTCTAAGCAGCAAACAGAACTTTATCCTCTTGGGGTAGGATTCTAGGATGCTGACAAGCATTTTACTCAGAACGTATTTTGGAAAAGAGTCTAGGAGACAGGAAGATCTCGCAGCAGGCATTAAGCCTGTCTGATGGCTCCTCTGCTCCTGGATAGATCTGCTTTTCCTGGCTCCGAGTTCCTTCCTCACTGGAGGCTGCTCAGGAGCAGAGGCTGTGGAGATGCCGCCATGGCAGCTCACTTGAGCTGTGTTTGTATTTTAGCCTGCTCTTCCACGGCTCATGAGCTCTTGAGCACAAGGCAATAGGTTCCATTTCCTAGTGGCTTTCTGTCATCTTTCCTATGACCAAATCAGAGTTCGGCCTAAATATGGGAACTGTCAACCATGCAGAGTGCTTATCCACGGAGGGCTAGAGATCTGGTTATACAAGCCTGCTGTCTCGTGAGAGAAGGTTGCATACATAATGACCCACAACCAAGGGGCTGTAAGGCAAGTCCGAAAAAGGCAAGGAAGACTGGTCAAAGTTGGGGAGTAAGACAAAATGTGTGTGCATTTATGCGCATGCACATGCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACTAGGGATTTAGCACAGCCTTTGCACAGGACAAATAAGTATTCTACCACTGAACTGTAATATTCAATGAATTTCAGCACAAAATTGCTTAGCAAAAATTGACTAACTTCCTACTCTGACCAAATCCCTCCTCCACTTCTTGGCAACTTTACCAG
Seq C2 exon
AATAACGGCGGCTGCAGTCCATTTGCCTTCTGCAATCACACAGAACAAGATCAAAGGACATGTACCTGCAAGCCAGACTACACGGGTGATGGAATCGTCTGCCGTGGCAGCATCCATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459:ENSMUST00000035288:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(40.5=62.5),PF129472=EGF_3=PU(5.4=8.3)
A:
NA
C2:
PF129472=EGF_3=PD(89.2=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types