RnoINT0144370 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27407067-27411353:-
Coord C1 exon
chr7:27411282-27411353
Coord A exon
chr7:27407103-27411281
Coord C2 exon
chr7:27407067-27407102
Length
4179 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CCACTCTTGTTTTTTACCAGAAC
3' ss Score
9
Exon sequences
Seq C1 exon
GCCGTCTGTAACTGCTTGCCGAAGTACACTGGAGATGGAAAGGTCTGCTCGCTTATCAATGTCTGCCTAACG
Seq A exon
GTGAGTACACCTCCGGGCCTGTAGCTTGGAGCCTTCCCCCACCTTCTAGGGAACTCCAGTGCTCTCCCCTGGGAATCGCAGAGCTGATTCTGGGTAATGAGGCTCGCTTTTCCTCTTATGTGCCACGGTCATACTGTGAAGAATGGAGAGAACAGGCTGCTACCCCACAGCCTGCCCCTTTGGCTACAAGATTCTGTAGGGACCTAACACGGAGCTGCTGTGGCATGCATCTGACCCAAAGTGAGCTGGATTCGTTTCCTAAAGTATGGGAGGCACTGTAAAGCATTCGTGTGTCAACTAACAAGTCTTAGGATCCTGTTCAGAACCCTTAGTCACAGTGACAGGGTATGCTGCCTGAGGTGGTTTTTTTGTTTATTCTTTATGTACCTAATGGAGAAGAAAGTCAGTTCAAACATGGACAAGCACAAGAAGTTATGCTGTGAAAGAAGGGAACACTGCAGAGACAGCGGGGATCAATCATCAATGGCCAGGATCGAGGGAGGGGGGAGGGAGAGGGGACAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAATAAGGGAAGCATGGGAGTCCTTAGGGATAGGAAACTACCAACAGGAAGCTTCCATGATGGACACACATCATTACACATTCATCAAGACCCACGGACTTCGCATACACCAGCAGGGGTGGGACACAACACAAGCTATGGACTTTAATGGCAGTACATCAGTCCCAGCAATGGGGGAAACCAGGGAGTGGCAGTGTCTCTGTAGGAAAGTCTGTTCTTTCCACTGTTTTCCTGTAAAGCTAAAACAGCTCTTCCAGTCAACTAGTCAAACAAGCAAACAAAACCTGCAGCTTCATATGAAGACAACTGTCAATTCTCCCCCGTCTTTCACCCGCAACACGCACGCACGCACGCACACGCCTGAACGCAGCTTCTGCCACCCAGACTTGGTATATCTTCCCCGTGTAAGCTATCTTCGTGATATTACAGAGAATGTGCCCAAAAGAGCACACAATTTTTTTTTAAAAAAAAGGTCCTACTTCTCTCAGATAGTTGACCTGTATCAGTATATTTCTACAAAGATGTCAGGACCCAGCAGCACGAGCTTCATGGCCTCTGTACAAACGTAACCTCATGGCAGTCCTGTTACGAGCAGCCTGCAATCCCTTCTAAACATCTACTGATTCTCACATGACGTTTGGCTGCAGACTGGCTCCGTGCTGTACCAACCAAGCAGGATCTTGCTTGGTTGAAACCGGATAACCTATGCACTGACGTTCAACCTACCCAGTAAAATAAGAGGCTCTGTTGCTATAGAATTTACATGACATCATCCTACAAGGTCCCATAAACCTGATACCCTGACATGTCACGTCTGGGCCCCCGAGGTCATCCAGGCCTCTGCATCAACGTGGCATCTACATGCACTGGTGCTTTCTCTCATCCACTTACTCTGCTCCCCGATGGGACAAAGACTAGTTACCCCCAGTTTGCTGATGAGAAGACTCTAGCAGTGAATTCTTCTCCAAAGCATCTTAGTTCCACTTCCTGGTGCACGATAAAATGCCCTAACAAAGCAATCTAGGGTTTATCTGGGTCACAACTCCAGGTCACAGTTCACCACTGTCACAGTGGTGGGGGCTTGAAAGGACTGGTTACATTATATCCGTAGCCAAGATCAGAAAGCAATGAGTTCGTGCATGTTCTCCTATGCACAGTCCAAACTCGCCATCAGAATAGGGCTGCTATAAAGTGTACCCATAGGCTGGGTACAGAAATTTATATGTGATTCTCGAGGGCGAAAATCTAAAGCCAGTGTCAGCAAGGATGTTTCTGGATGTTTGTACAGAGATCATGAAGTTCATGCTCCTGGGTCCTGAAATCTTTCTAGATATCTACTGATACAGGATAACATATCTGAGAGAAAGTTGAAATCTTCAAAGGTCAGGTATTGTTTATGGCAGAATTGGCCTCCCTGACATCAAAAATGCTTGGGTCTCATTTCTGAGTGTATCATAGAACCTCTTCCTCTATCTCAGTGAAGGCAGATAGGGGAGGGCAAAAGTGTACCCATCCACACGCACGCGTGCACACACACACACATACACACAACACCACACACACACCTCACCATACTCTCCATACACTACACACCCATAACCACCACACACTCCATCTCCTCATATACCATAAAATACCATGCATATACACACACATTTCATATAACACATACCCTCATGGACCACACAACACAGACACACATGCATGCACATACACAAACACCGGATACCATAGATCCAACATATATTACATCTACCCACACACACTCCATATATCATACATTCCTACACCCTCTCCACTCTCACCCCACATATATCCTAGACAACACACACACACACCACACACACACACACACACACGCCTCAAATATCCCCCATAATTCCAGACACCACATACATACACCTTACACCAAACATACATACACACGTATATCATCTACCACATACCCCTACACAATACATACACGATATACACACGCACATCAGCAAGAATACATACACCACAGATATGCCCTCCTATACCCCCATACATCACAAATACACACACACATATATGCCACATACTTCAATATATAACATATACCATATACCACACGATACACATATGTACACACATGCACACAGAACATACATACACCACATGTATATACCTATATACACACACCCATCCATACACTACACATACCATGTACCACAAATACACTATATACGCACACCAGAATATGCATACCATTAACATACCACATATGCATATACCTATACTGTAACACACCATGCACCACATAGACCCATATTCCATATATAAGACACACACCCATATCACTATACCCTATATACTATCACACACATATCATACACACATATACTATACACACCCACGCCATATACCACAAATATCCATACATCATACGCCATGCGAGACGAGGAGAGAGGAAGAGGGATAGGGAGGGAGGGAGAGGAGAGAGGAGATGGAGAGGGGAGGAGGAAGTTGGGAGGAGAGGAAGAGGGGGAGAGAGGAGGAGAGGCGGAGAGAGAGAGAGAGGAGAGAGAGAATGAACCTCCCACAACGAGGGGAAGCAAAGCTCCGAGAGGCGACACACGCATAGGACAGCTGCCGTTTCCAGAGTAAAGAACACTTTGTGAGACAGGAAGGAGTGGGCTGTGGTGAGGAACAGTGTTCAGAACTACCACGGATCCGAGTGCCCTGCATGGTGAGGGGATAAGCTGGGACTTCCTAGCACCTCTGAGTGGACAGACTCAAGAGAGCTGTGACAAGACTGGACTCTCTCTGTTGGTCTTGGAGCTCCACGCTGTGTCTTTTCAGCTATTAACGGTGCAGGGTCATCTGACTGCCAAGTAGCTCACTTTTTTAAGCTGCAAATAGAAGTTTCTCCTCCTGGGGTAGGACTTCTGGTGCTGACAAGCATTTACTCAGTGGGTTATTTGGAGGAGAGTCAGGGAGCCGGAAGAACTCACCAAAAGTCATTGAGCTGTCTGATGGCTCCTCTGCCATCGCTGGAGTCTACCAGGAAGCGAAGGCTGTGGGAGACGCGGCCCATGGAGGGCTCACTTCCATGCTGTCCTTTTGAATTTTAAGCCTGCTCTTCCACTGCTCAATGGCTCTGGGGCACAAGGGATATAAGATTTCTATTTAATACCTGGCTTTTCTGTCCTCTTTCTATGACCAATCGAGTTTGTGCCCTAAACATGGGAACTGTCAAGACTGGCGCTTATCCATGAGGGCTAGAGATCTGGTTATGCGCGCCTGCTGTCCGGGTGAAAGGCCGAGTAAATATGGGGCCAACAACCAAGGGGCTATAAGGCAAGTCAAGGAAAGGCCAGGAAGACTGTTCAAAGTTTTGGAGAATAACGATGAAATGTGTGGTGCTTTTATGTCAGTGGTATGCGTGTACATGCGTGGAGTGTGTTGCTCAGGAATTGTAGCTGCAGCCCTTGGCAACATGACAGACAAGTATTCCACCACTGAACGTAATATTCAATCAATGCCCAGCACCAAAATTCTTTAGATAACCTTGGCAAAACGTACTGATCGTTGAACCCCTCCTCCACTCTTGTTTTTTACCAG
Seq C2 exon
AACAATGGCGGCTGCAGTCCATTTGCCTTCTGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(40.5=62.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]