GgaINT0112649 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56840288-56842487:-
Coord C1 exon
chr1:56842416-56842487
Coord A exon
chr1:56840408-56842415
Coord C2 exon
chr1:56840288-56840407
Length
2008 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTAAATTTTGATCTTACAAGAAC
3' ss Score
2.87
Exon sequences
Seq C1 exon
GCAGCCTGCAATTGCTTGAAGGGATACTCTGGAGACGGTAAAAGATGCACATACATCAATCTATGTTCACAA
Seq A exon
GTAAGTAACACTTGAAGGAGAGAGTATTTAAGATCTTGCTATGAGCGTTACACTTTGAGGCTTGGTATGAAGTCAGTACTAAGTCTGATAGGTAAACCAGCCCTATGATGCTTAGAAACCACTTACATTAACTTATTTAATTTTTAAACATGCTTACTTCACTACTTGCTTTCATACTGTCACTATTTTGGAAACAAAGTATGCAGTAAAGGTTTTTCCTGGAGCACAGCCTGGACACCATACAAGTGCCTGGACTCATCACTGAGTCTTAAAAACAACTTTAAATCAGATCTAGAGACACAGATCCTAGGCTGTAATGGTAGCGTGTAAATCATGTCTTCTCAGTAGACAACAGAATTCCTATAAAAAGCCACTACCTAAATTAGAGTTCATGTCCCAAAGGTCTGACCAACTATTATGAGGAAAAGCTCAGTGTGAACTATTACAAGTTACCTGCAATTAAATATATATGTATATACAATGGGGATGCTCAGGAGGTAGGGCATGGCTGTTCCAGGAGCCTGCTGATTGAGAAGTAAAAGGAACTTATGGTAGGTCAAAACCACCACTTAAGTTCAATATTCCCCAGTCACTAAACCCTCTGGTATGATATGGGACCACATCTGGGCAGCCTAATTGAGAGGAATGATCAAGTGACAATAAACACATACCCTTCTCAGGCTGAAGTTTCTGTAGCCCAATCAGAACATTAAGTCCTCACCACTGCTGGGTCACTACCAGTGAAATCCTTGTTGGGGGCAAACAGTTGCTTGGAGAACTGACTGGAGAGGAAATTCCCAGTGCAGGTCCCAGCCTACATGCTCAGCTGGGGCAAAACTCCCATGGAGCAAAGACCAGAGCCACAAAGGCTTAAAAATAAATAAGAACATCTTCTCAGGGCAAACTACTTTCCTTCTTAGCCCTCACAACATGCAACCCAGGCCTTCCCATGGCATTCCCCAGCCTGACCTGCACCTGAGAATTAGCAGCTTCCATTTCATGCAACCACTGCAAGCCATGTATTTGCAAACAACGCGGTGCTCTGCACCAGCTGCATTGCACTGCCTCTTGGCAGGCTGCAGCAAGGACATACCCAGTCTCCCATACACATTAATTCTTCGTGCTCTGTGCACTGCGACAATAATTCTTACGCTTCCCTGCCTGGCCTGTCAGCAGGCTTTCTCTAACCTTGAAAGGTTGCTGAGATGAAAGAGCAAGGGCGAAGACAGAAGCTACAGGAAGAATAGCTCAAAATTATGAGTCATTGTGCCCTATGCTTTTTTCTATGCCATGTTCTAGCAACTTCCACATTACTAATCATGCCATTTAAAAAAAATAGCCTTGAGATTTGTTACCATCAGACCAGAGACTAACCGAGCTCCAATATGGCCAAACCCCTCTGCAGCAAAACTTCATGAGAAGCTGTGGCAAACCCAAGATTGCCAACAGTCTGCCTACAGCTAGCAAAATAAAGAGAGCAAGCACGTTCAAACTCACTTCTTAGGGCCAGCCCCACTGGGAGCTCCCAGGGGATGTTCCACATACTTTGCCCATGGCAAAGGATGAGCCACACTGAGAAGGACAAAACAAGCACACAAAAGAAAACAAGACAGCATCATTTTTTCCTGATTTGCTGTCAAGTCCAGGATGAAGTCTTTACTGCAACCTGAGGTGCTAAGTGGGGAGCACAGACTCACAATGGGTCAAAGCTCTGAACCCCTCAGCTCAGAGTTTCCCAGAGCATAAGCAGTGCTGGGGTGCACAGCTGCTTCCAAAGCACATTATCTGGATAAAAGGAGAGTTAATGCAATTTCTTACGTGCATTATATGTTCTTTCTTGTTTGCAAGAACAAATATACACAGTTGTAAGTGTCAGTAAGATCTGGTTTCTAAAAGCCACTTTGGCTTAAATCCTCCTAACCTATACACACGGGAATAAAAGAGATTTACTAGAATTGTTTTATTACACCTGGAAACAACAGAATACTTTAAATTTTGATCTTACAAG
Seq C2 exon
AACAATGGAGGCTGCAGTGAATTCGCCATCTGTAAAGACACCGAGCTAACAGAACGAACTTGCACCTGCAAACCAAACTACATTGGAGATGGATTTAAATGCCGAGGCAACATCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(40.5=62.5),PF129472=EGF_3=PU(5.4=8.3)
A:
NA
C2:
PF129472=EGF_3=PD(89.2=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]