HsaINT0160061 @ hg19
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:18629]
Coordinates
chr12:104111548-104118872:+
Coord C1 exon
chr12:104111548-104111619
Coord A exon
chr12:104111620-104118752
Coord C2 exon
chr12:104118753-104118872
Length
7133 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCCCTTGGCAATTTTACCAGAAA
3' ss Score
4.8
Exon sequences
Seq C1 exon
GCTGCCTGTAACTGTTTGCCAGCATACACTGGAGATGGAAAGGTCTGCACACTCATCAATGTCTGCTTAACT
Seq A exon
GTGAGTATGGCTCTAGGGTGGATATCCTTCAAGCCTCAGAGCCCAGGGTGCCTCCCACCCCACTTCTCGGGGATGCAGAGTTGAGGAACTCTTCCTCTGGAGGCCTCAGAGCTGTGTGTTGACCATGAGGCTTGTTTCTCTGGCACACTCCATTGTAATGTTGGGGAGAAAAGAGAGAAGGCACAGTCTGCTACCCCCAGCCTGCCCCTTTGGCTGCACCATATTGAGCTAAGTCTATCCACTTGCTTATCCCCTATCCATATTGCCAACTCTTATGAAAAAGATCCCTTTCCACCAAGCATGTCTCTCACCTCCTCTAGGAAGCCATCTTAGGTAAACCTCACAGCAACTTTCCACTCCTTATTCTCCTAGACTTACACGTAGGAATCCACAGCGAGCGCACTATGAGTCAACAATATAGTGTAGCATTCCAAAAGCTTGTTCTGTCATCACAGAGGCCTAGAGGACAGGCTAAGGAAGATGATTCTACTCTCACCCCACAACTACCCTCCATGGCCCCTACCACCCCCATTCTACATGATAACTCTACCTTAGAACAGAAGATCCAGTTCTAGATGCTCTGCATTGAGCAGGGGTTCATATGGGGATAGAAGCACTGTGTCTCCTATGTCCATGCACACATCATTAGTTCTCCCAGTTCTCTCTCTCTAAAGAGGAATTGGGATGTAGGGTGGAGGCTGCCACCAACATTTCAAGGATTGCCACAAAACAGAAGGGTTGTTCTTGTTCTGTGTAAGTCCAAGCAGTAGGACTAGGACCAGCGGATGGACATTAGAAGAAAACAGATTTCTTTCAACTTAACTCACTTATTTCATTAGAACTGTCCAGACATAGAGAGTTTTGAGAAGTAATGAGCTTATTATAACTCAAGGTATTTAACTATAGGAATGAAGCAACAGATGGGTTATCAACCCAGACAGCCATTTAGATTCCTCCCAGCCCTGATCCACATGACTCTAGGGTTTTCGGTTGGTTTGCTTCTTGGGACCTCAGTTTCCTTGGATGGTTATAAGTGTCCCTGGAATTCCTTTTACCACTAACATCTGGGCTTTGACTTTCTTCCTCCAGTCTGTAGGATATTGTTGACACACTTCTTGTCTCCGTTTGCATGTCGATCCTGGCAGGAGCAGGATCTTCTGATTTTCTTATAACCCTTGACTGCAGGCTGGACCCATGTTATGCAAACGAGGAGTTTACTCAGTCATTAATCACTGAGTCTCAAACTGGGCTAGTCGCCTACTGCTGCTCAGAGCCTAATTGTCCCAGGCCTGGTACCTGCAAAGGGATGAGATAAGCCTGCTGACCCAGCCTGTCACATCCGGAGCAGTTTGTGTGGTCAGCTAGGCCTCTGAAGTCCTGCATCAATGTCACATTCATATCCACTGCTTGCCAGGGGTCAGCCACTGTGCTTAGGGGTGCCCAATCATTCTTTCGTTTAATTTCTCTAACAGCCATATGAGGTAAGAACTGTTATTAACCCCATTTTACAGACAAAGAGACTCTAGCTGTGCCTCTTTCCTAGGACTGCTATAACAAACTGCCACAAACTGGGTGGGTGAAAACAATAGAAATGTATTTTCTCACAGTTCTAGAGGACCAAATCCAAAATTAAGGTGCCTGCAAGGATGTGCTCCCTCTGAAGGCTCTGTGGGAAAATCCTTCCTTTCCTCTTCCAGCTTCTGGTGACTCCAGGCATTCCTGGCCTGCGGCCGCATCACTCCAATCTTGCCTCCATCTTCACATGGCCTTCACTTCTGTATCTGTGTCTTCTCCTCTTGCAAGGACATTTGTGGCATTAAGTGGTTAATCTAGGATGATGTTATCTGGAGATCCTTAATTACATCTGTAAAGACTCTTTTTCTAAATAAGTTGCATCCACAGTTGCATCCAGTCCTTAGGACAGTTCAACCCACTAGGCTGTGAGGAGTGAAGGCCCTTGCCCAAGGCCACAGAGCTAGTATGTGGCATGGCCAGCACTTGAGCCTATCTCTGTCCTACTCAAGACCTGCACCCTTGACCACTTCTTGGGGTGCTTATTCTTCCTACAAGGCCCAATCCCAACACCTTGCTTTCCTGTTTATATTACTTCCCACCTGAGAGCCTCCAGCTGTTGACATGAGAACAGTGCAGACGCCCTGTAATTAAAGCCCTTCTTCTTCAATTGAGGCTCCCATTATCTCCTTGTGTTTGTCTGGCAAGCTCCTCAAGAGATCAATGTCCTCTACATGAAACAGTTATGTAAGGATAATAAAGAAGAAGCTACGGAAAAGATGGGGGCTGAGATGTGAAGCTATTACCACTAGAACTATGGCCAGCTTAATTTTCACAGCAATTCTTCCATGGGCCATTCATGTTTTGTAAAAAAAAATGGCCACCTTGTCTTGGACAAATGACTCCTGATACAGCTGACCTGGGAGATTCTGAAGGTCTTTTGCTACTCTATCTCAGCAGCATATTCCCATGGGAATTAACTCTATTGCAAGATTGTAAAATTATAGGCCATCAGGGGCCAGGCAGGGAATAATATCAACAGGAAGACCCAAATCATATTGCTGCTCTAATGGGGAAATATCTACTCCAACTGACTGGTGCTCTAAGCTATGTCAGCCCAGTGTTGACGGTACTCCTGACATTTTAAAAGATATGAAAATTTATGAATTTGTATGTAAATTTTACTAATTTGTAAATGATGGTAATTCATTCCAAAAAGCTCTTTTAAATACTGGGCTAAAGAAACAAAATAGTCCTGGTGCTAAATCTGGCCCAAGAACAATTATTTCTGCTCAAGTCCTACCAACAAGGACTGTGAAACATTGCCTTTCCTGAGTTAGTCCCCAGTCCAAACTGTTTTAGTTCATTTGTGCTGCTTTAACAGCACAGAGGATACCTGAGACTGGGTAGCTTATAAGCAACAGAAATTTATTTCTCACATTCTGGAGGCTGGGCAGTCCAAGATCAAGGCACTGGCTAGTTCTGTGTCTGCTGCAGGTCTGCTTCCTGGTTCACAGACGGTGCCTTCTTGCTCATTGGTAGAAGGGACAACTGAGTTCCCTTGGGTCTCTGTTTTCTTCTCTTTTCACATCAGAAGGGTAATGTGTCAATGTTGTAACAAGTTTTGAGGGAGGCACATCTCATAGAATAGTGTGAAAACCCAATATCAAGCTAATGAACCACAAAAGGATCTCTCTTTTATAAGGGCACTAATCCCATTTATAAAGGCTTTGCCCTCATGAACCTAATGACCTTCTAAAGGCCCCACCTCCTAATACCATAGTGAGGGTTAGGTGGGGGACACAAACATTTAGACTAGAGCAGGAGGCAAACATGTTGATGGAACAGAGACTGGGTGAGAGGGGAAGGGTCGTAGTGATCAGACAAGGCCTCTCTGCCGAGGTGACTCATTCCTGAATGTTAAGAAGCGGGCAGCCACATGAAAATCTTGGGGAAAATGTATAAGCAAAAGGAAGAGCAAGCCAGGGGTCCTGGGAAGAGGAAGAGCTTGGCATGTTCTGGGAACTGAAGAGAGAGCCAGTGTGAATGCAGTAAAGGGAATAAAAGGGAGGTGGTGAGAGGGGCCAGATCACCTTACCCCATGTAGGCTATGCTGTGGAGCTTATATTTTTTTCCAGTTGTGACTAGGAAGCCACTGGATGATCATGTAGGTCAATGTCAATGTCTGGCTTGGCTCTCAAATCTCATTCTGGCTGCTGTGATGACTATGCAGGATAGGGGTTCTAAAGCAGAAGCAAGAAGACCATGTAAAAGACTAATGATGCTGACCAAGAAAGACCAGGGTGGTATGACTAGAGCTATAGCAGTGGGTGTAATAAGAAGTCGCTTGGGCCAGGTGGACATAGTGGCTCATGCCTATAATCCCAGCACTTTGGGGCACTGAGGCAGGAAGTTCACTTGAGCTCAGGAGTTTGAGACCAGCTTGGAGAGAGAGGGAGATAAATCACTGGACAGGGGATGTATTTTGGAGATAACCAATAAGACCTGCTGATAGACTGGATATGGGAAATACAAGGAAAAGGAATCAAGGACACTATCTAGATTTTTTGTTGAGACATGTTGGTTCTACTCATGAAGATAAGGATGGCTTAGGAGGAAATGTTGAGTGAAATATCAACAGGTCTGTCTTTTTGTTGAGTTTGAGTTGCTTGGTAGCCATTCAAGTGAAGATTTCCAGTGAAATGTAAGCCTGAAGGAGAGATCATGACAGAGGTACAAACATAGCGGTCATTGGCACACAGATGGTATTTAAACACAGGGGACTGACTGAAGCACAAGATGAAAGGTAGAGGCAAAGACGGGGCAGGTGGAGGGGCCCTGGATATTAAGCCATTGAGCAGAGGAAGAAGTACTTACGGAGAAGCCTCAGTAAAAAAGCCCACAATGTGGAAGGAAAACCACTTATCAAGTATAGTGTCAACAGAGACCAAGAGAAGAAAATGTTTCAAGAGGAGTGATTGTACAGGCAAAGGATGTTGAGATGTCACCTATGTTGAGAGAAGAGAACTGACCACTGCCTTCTCAAGGTCTCAATTCTTGAAGACAAGATCAAGGTGGAGGCTTGTGTAAAAGTGGCACCAAGAGCCTGGAAGTAAGTTGAGAAGAAAATTGGAAGTAAGGAAAGTAGAAACATAGACATTTGCAAGGATCTTCCTGGGCAAATAAATGGGTAGTTAATGGAGAAGGATGTGGACTAAAGTAAGTAATGTTCCTAACACTTTACCCTGGAAAATTTTAAACCTACATGAAACTAGAGCAACTAATACATGAACCCATCTGTACCTGACACTCAGGTGAAAGAGTCAACTCATGGTCAGTCTTTGTTCATCTATACCTAGTACGTTCTCTTAAAGGAAAAAAAAAGGAGTTTGGCTTTTTTCAAGATGAGTAATATGAAGGCATGTTTTTGTGCTGGGGAGTATGATCTGATAGAGGGGAGGAAACCACTCCTGAAGGAGAGCAGGTTGTTGTTACAGGAGGGGGTGAGAGGGAGTGGGACCCAGACCCCAGGTGGAGACATCACCCTCAGATAGAAGCAGACGTAGTGTCGGTCAGTATATTAGTCAGTGATGAACTAGTGAGTCCATTAATGAGTCAGTCCATTAGTTAGTTAGTTGTTAGTACACTTGTTAAATAAGGAAAGCACAGTCCGTGAGTTCAGACCCAAACAAGTGGTGAAGCTCAGGATGGGGAGATGAGGTGGTTCTTGTTACCTGTGTCTCTTTTCTCCATGAGGCACAAGTGGGGCTCATCAACTAAGATGAGAGGACAGTAATTGAGAGTTGAGAAAGGTGAGGAGTGGAATGTCATCTGTATTAGTCAATTTTCACGCTGCTGATAAAGACATACTCCAGACTGGGCAACTTACAAAAGAAAGGTTTATTGGGCTTACAGTTCCCCATGGCTGGGGAGGTCTCATAATCATGGTGGAAGGTGACAAGCATGTCTCACATGGTGGCAGATAAGAGAAGGGAGCTTGTGCAGGGAAACTCCCATTTTTAAAACCATCAGATCTCCTGAGATTCATTCACTATTACAAGAAGAGCACAGGAAAGACCTGCCCCACAATTCAATCACTTCCTACCAGGTTCCTCCATGACACATGAGAATTGTGGGAGTTATAATTCAAAATGAGATTTGGGTGGGAACACAGGCAAACCGTAACATCATCTCTAGAGAGAGGGAAATTAAATGTACTGCAAAAGTGCAAGCATCTGTGTACATACCTTTGAAGGGAGTCCAGATAGCATGTATCGTGACTTTCTCAGGCAATGCACCGCCAGCCCGGCAGACCCAGAGAAGTTAGAGTGGGGCCCAGGAGGGCTAGGGATTTGCCAAGCCATAGTGATGGAGGGAGAGAAGAGCCAGGGAGGGTCACAGTGTTCCACCTTGCCAGCTGGCTGGGGTTCGAGGGGACTGAGTGGGTGGGCAGGAATGCTGGGGAGAAAGAAGTAAGCTCAAAGGAGGGGAGGTTCCTGTGGACCAAAGGAGGTTGGAGACTGCAGTATTAGAAGAGATAAGTTGAAATGATAAAAGTTGGTGGCCAGAGAGAGAGGGATGCTTGAAATGGAGCTCTCAGGAGCAGTCAGTGCACTTTAATGTTGACTGCAAAGCCAGGGGATGGGGACAGGGGTGGTAGAGGCCGTTGACAAGGGTATTGACACTGCCACGGACGGCAACATCAAGAATGAAGGGAAAGGCGGTGATCCAGGCAACACCATTAGGACCAAAGAGTAAAAATTGGTAAAGGATTATGGATACTATGTGTTTAAAGGATGAGGGTGTTTGGAAGTGACAATGTACAGTAAGAAAGACACTCTCCCAGCACAGCCAGGACATTGCCACTTCAATCCCTCACCAGTGTGGAGGTAGTGGAGGAAAACAGCTTCACTTGAGGGGCATAGGAAGGGCAATGTTTGCAGGAGACAAAGACCTCTGCAGGAAGAGGTGAAGGGAGCTTACTAAGGTGAGAATGTCAGAAAGTTGCTAATGGCAATGACTTTGAGAAAGCACGGGGAAGGGTTTGTGAGGAAGGGGCCTATGGGGTCAGGTGATGCGTGTGTAGAGGAACATGGGGTGAGTGTCCCTGCAGTGAGCGTTCCCATGGATGTTAGCTTTGAACCGTGCTTTGCTTTGTTTGTATTTTAGGTCTCTGCCCATCTTCCACAACTTATAAGCTCTTTGAGGGCTGGGACAATGTGTTCTATTTTGTACCACCTGCCTTCTCTCTGATAATGGTTACCTTTTCCTATGATCAGAGTTTAGCTTAAAGCTGGGAAGTATCAAACAGGTGGGGTCTTCCTAGTTAATACCTGGATGCTGAGAAATTTCCAATTTGGCAACTCTGGGCTTACCTGTACAGGGCTGGAGATCTGCTCAAAGGGACCTGTCATCTTAGGATACAAGGCCAGGTGAATAAGATGCCCCTATGAGCATAGGGAATTGGAAGGCAAGCTCAGGAAAAGGATAAACAATACAAATGAATCAAAGAGAGTGAGACAAAAAATGAATTCAAACGCAGAATTGCTTTGTAAATATCGGTAGAGCTGGCAAACTAACTGGTCTAATCCCCATCCCTTGCCCCTTGGCAATTTTACCAG
Seq C2 exon
AAAAATGGCGGCTGTAGTGAATTTGCCATCTGCAACCACACTGGGCAAGTAGAAAGGACTTGTACTTGCAAGCCAAACTACATTGGAGATGGATTTACCTGCCGCGGCAGCATTTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-STAB2:NM_017564:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(40.5=62.5),PF129472=EGF_3=PU(5.4=8.3)
A:
NA
C2:
PF129472=EGF_3=PD(89.2=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)