MmuEX0047321 @ mm10
Exon Skipping
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3477175-3503060:+
Coord C1 exon
chr17:3477175-3477278
Coord A exon
chr17:3486649-3486848
Coord C2 exon
chr17:3502881-3503060
Length
200 bp
Sequences
Splice sites
3' ss Seq
ACTCTGAGTCCTGCTTGCAGGTT
3' ss Score
6.41
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
ATTTCAGCAATGTCCCTGAGATCACAACTGGCTTGAAGAGGAGCCAGACAGAAGGCACCCTGGATCAAGTGCCCCACAGGGAAAAGATGGAGCAGACATTCCTG
Seq A exon
GTTCTTGAGCCTTCTTGTGGAGACTGGACCCATGGCCTGGGCTGATGATGGCTTCCTTTGTCCTTGGCTAAGCCACCAGACATCTGCATCTGTCTGAGAGGCAGCCCTGAGCTGACACATCTCCCTGCTCATCCTTCCGTCCAAATGTGTCACCTTGGGCAGTCCTTTACCTGACACTGCTGCTGCTCATCCTCATGCAT
Seq C2 exon
AGCGCTGACCAGATTGCGGAGCTCTGCAGGGACTTGAACAACACCCACACCAACAGTATGGAAGCACCAACAGAGAGCCATGACCCACCTCCCAGGCCTCTGGCTCGTCACCTCTCAGATGCAGATCGCCTCCGGAAAGTCATCCAGGAGCTTGTAGACACAGAGAAGTCTTACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=0.071 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(6.8=21.7)
Main Inclusion Isoform:
ENSMUST00000072156fB4136
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAGCAATGTCCCTGAGATCA
R:
CTTCACGTAAGACTTCTCTGTGTCT
Band lengths:
284-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types