MmuEX0048179 @ mm10
Exon Skipping
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45664172-45667659:-
Coord C1 exon
chr16:45667552-45667659
Coord A exon
chr16:45667138-45667329
Coord C2 exon
chr16:45664172-45664282
Length
192 bp
Sequences
Splice sites
3' ss Seq
ATGGGTTGTTCTGTGCTAAGCTC
3' ss Score
3.29
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
CGTGTCCTGCAGGATCTTTTAGGTGCTCCTCCGGTTTGTGTGTCCCTCAGGCCCAGCGTTGTGACGGAGTGAATGACTGTTTCGACGAAAGTGATGAACTTTTCTGTG
Seq A exon
CTCCTTCCAGGTTGGCGTCATGGCTATTCTTTATGGCCCGGTCTTTCATGGAGTCAAGGAGCTAATAGAAACAAAAGCAAGGAAAAGTAAACATCAACACCTGGCTTCCAATAAGGGCTGGCCTTGCAAAACTTATATCATATTCTGTTGCTCCAAAGAAGTCGAATGGCTAAGCCCATGTTCAAGAGAGAG
Seq C2 exon
TGACTGTAAAACCTGCCTGCAACAGCAGCAGCTTCCGGCAGCATGGCCCTCTGGTCTGTGATGGCTTCCGGGACTGCGAGGATGGTCAGGACGAGCAAAACTGCACTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=55.3)
Main Inclusion Isoform:
ENSMUST00000114562fB4203
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGGATCTTTTAGGTGCT
R:
CAGTTTTGCTCGTCCTGACCA
Band lengths:
206-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types